LINC01551 long intergenic non-protein coding RNA 1551 [Homo sapiens (human)] - Gene

Summary

Official Symbol: LINC01551provided by HGNC
Official Full Name: long intergenic non-protein coding RNA 1551provided by HGNC
Primary source: HGNC:HGNC:19828
See related: Ensembl:ENSG00000186960 AllianceGenome:HGNC:19828
Gene type: ncRNA
RefSeq status: PREDICTED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: C14orf23; c14_5148
Expression: Biased expression in brain (RPKM 1.5) and testis (RPKM 0.6) See more
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Genomic context

Location:: 14q12

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	14	NC_000014.9 (28772704..28794794)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	14	NC_060938.1 (22970638..22992723)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	14	NC_000014.8 (29241910..29264000)

Chromosome 14 - NC_000014.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

LINC01551 promotes metastasis of nasopharyngeal carcinoma through targeting microRNA-132-5p.
Title: LINC01551 promotes metastasis of nasopharyngeal carcinoma through targeting microRNA-132-5p.

Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis. EBI GWAS Catalog EBI GWAS CatalogPubMed

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

D14S709E (e-PCR)
- UniSTS:151582

D8S2278 (e-PCR)
- UniSTS:473906

D8S2279 (e-PCR)
- UniSTS:473907

D11S3114 (e-PCR)
- UniSTS:152207

D14S835 (e-PCR)
- UniSTS:43410

A009L03 (e-PCR)
- UniSTS:40626

D14S1042 (e-PCR)
- UniSTS:61899

A004D23 (e-PCR)
- UniSTS:35789

G32636 (e-PCR)
- UniSTS:117219

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

NR_026731.1 RNA Sequence

Status: PREDICTED

Description

Transcript Variant: This variant (1) represents the longer transcript.

Source sequence(s)

AL049777, BX111279, BX248251
NR_026732.1 RNA Sequence

Status: PREDICTED

Description

Transcript Variant: This variant (2) uses an alternate 3' splice pattern, compared to variant 1.

Source sequence(s)

AI204146, AL049777, BM839073

Related

ENST00000552957.6