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OR4D9 olfactory receptor family 4 subfamily D member 9 [ Homo sapiens (human) ]

Gene ID: 390199, updated on 2-Nov-2024

Summary

Official Symbol
OR4D9provided by HGNC
Official Full Name
olfactory receptor family 4 subfamily D member 9provided by HGNC
Primary source
HGNC:HGNC:15178
See related
Ensembl:ENSG00000172742 AllianceGenome:HGNC:15178
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
OR11-253
Summary
Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]
Orthologs
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Genomic context

See OR4D9 in Genome Data Viewer
Location:
11q12.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (59511539..59520703)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (59462418..59471582)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (59279012..59288176)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene olfactory receptor family 4 subfamily D member 11 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:59293606-59293887 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:59295867-59296368 Neighboring gene olfactory receptor family 4 subfamily D member 7 pseudogene Neighboring gene uncharacterized LOC102723575 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4755 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:59312511-59313710 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4756 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:59318146-59318647 Neighboring gene tRNA-Val (anticodon TAC) 1-1

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables olfactory receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
olfactory receptor 4D9
Names
olfactory receptor OR11-253
olfactory receptor, family 4, subfamily D, member 9 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004711.2NP_001004711.1  olfactory receptor 4D9

    See identical proteins and their annotated locations for NP_001004711.1

    Status: VALIDATED

    Source sequence(s)
    AP003778
    Consensus CDS
    CCDS31564.1
    UniProtKB/Swiss-Prot
    Q6IFF3, Q8NGE8
    UniProtKB/TrEMBL
    A0A126GVP8
    Related
    ENSP00000493010.1, ENST00000641962.1
    Conserved Domains (2) summary
    pfam00001
    Location:41287
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:33301
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    59511539..59520703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    59462418..59471582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)