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snapc1a small nuclear RNA activating complex, polypeptide 1a [ Danio rerio (zebrafish) ]

Gene ID: 393233, updated on 17-Sep-2024

Summary

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Official Symbol
snapc1aprovided by ZNC
Official Full Name
small nuclear RNA activating complex, polypeptide 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1031
See related
Ensembl:ENSDARG00000029569 AllianceGenome:ZFIN:ZDB-GENE-040426-1031
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
snapc1; zgc:56450
Summary
Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Orthologous to human SNAPC1 (small nuclear RNA activating complex polypeptide 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See snapc1a in Genome Data Viewer
Location:
chromosome: 20
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (20314364..20324787, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (20414694..20425211, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2, regulatory subunit B', epsilon isoform a Neighboring gene sphingosine-1-phosphate phosphatase 1a Neighboring gene hypoxia inducible factor 1 subunit alpha b Neighboring gene protein kinase C, eta, b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Transcriptomic signatures for ovulation in vertebrates. Liu DT, et al. Gen Comp Endocrinol, 2017 Jun 1. PMID 28111234, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC56450

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in snRNA transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in snRNA transcription by RNA polymerase III IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of snRNA-activating protein complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
snRNA-activating protein complex subunit 1a
Names
small nuclear RNA activating complex, polypeptide 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200263.1 → NP_956557.1  snRNA-activating protein complex subunit 1a

    See identical proteins and their annotated locations for NP_956557.1

    Status: PROVISIONAL

    Source sequence(s)
    BC049022
    UniProtKB/TrEMBL
    Q7ZUJ0
    Related
    ENSDARP00000042375.4, ENSDART00000042376.7
    Conserved Domains (1) summary
    pfam09808
    Location:15 → 198
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    20314364..20324787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068215392.1 → XP_068071493.1  snRNA-activating protein complex subunit 1a isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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