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ARNT aryl hydrocarbon receptor nuclear translocator [ Sus scrofa (pig) ]

Gene ID: 396653, updated on 17-Aug-2024

Summary

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Official Symbol
ARNTprovided by VGNC
Official Full Name
aryl hydrocarbon receptor nuclear translocatorprovided by VGNC
Primary source
VGNC:VGNC:98733
See related
Ensembl:ENSSSCG00000006646
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
ARNT_tv3
Expression
Ubiquitous expression in lung (RPKM 19.5), spleen (RPKM 17.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ARNT in Genome Data Viewer
Location:
chromosome: 4
Exon count:
23
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (98333431..98390012)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (107586868..107638152)

Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene MINDY lysine 48 deubiquitinase 1 Neighboring gene annexin A9 Neighboring gene ceramide synthase 2 Neighboring gene SET domain bifurcated histone lysine methyltransferase 1 Neighboring gene cathepsin K Neighboring gene cathepsin S Neighboring gene HORMA domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. The tertiary structures of porcine AhR and ARNT proteins and molecular interactions within the TCDD/AhR/ARNT complex. Orlowska K, et al. J Mol Graph Model, 2016 Jun. PMID 27288759
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aryl hydrocarbon receptor nuclear translocator

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001315687.1 → NP_001302616.1  aryl hydrocarbon receptor nuclear translocator

    Status: PROVISIONAL

    Source sequence(s)
    KP735786
    UniProtKB/TrEMBL
    A0A4X1SE48, A0A8D0SIB3, A0A8D0XIQ1, A0A8X9AEK9
    Related
    ENSSSCP00000007087.4, ENSSSCT00000007282.5
    Conserved Domains (5) summary
    smart00091
    Location:166 → 230
    PAS; PAS domain
    cd00130
    Location:362 → 458
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:91 → 143
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:163 → 269
    PAS; PAS fold
    pfam14598
    Location:362 → 462
    PAS_11; PAS domain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

    Range
    98333431..98390012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001929670.6 → XP_001929705.4  aryl hydrocarbon receptor nuclear translocator isoform X4

    See identical proteins and their annotated locations for XP_001929705.4

    UniProtKB/TrEMBL
    A0A4X1SEL9, A0A8D0LI99, A0A8D1NAF4, K7GNG1, K9J4M4
    Related
    ENSSSCP00000029414.2, ENSSSCT00000034834.2
    Conserved Domains (5) summary
    smart00091
    Location:151 → 215
    PAS; PAS domain
    cd00130
    Location:347 → 443
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:76 → 128
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:148 → 254
    PAS; PAS fold
    pfam14598
    Location:347 → 447
    PAS_11; PAS domain

  2. XM_005663493.3 → XP_005663550.1  aryl hydrocarbon receptor nuclear translocator isoform X5

    UniProtKB/TrEMBL
    A0A8D1NAF4
    Conserved Domains (5) summary
    smart00091
    Location:151 → 215
    PAS; PAS domain
    cd00130
    Location:347 → 443
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:76 → 128
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:148 → 254
    PAS; PAS fold
    pfam14598
    Location:347 → 447
    PAS_11; PAS domain

  3. XM_021088680.1 → XP_020944339.1  aryl hydrocarbon receptor nuclear translocator isoform X6

    UniProtKB/TrEMBL
    A0A8D1NAF4
    Conserved Domains (3) summary
    pfam00010
    Location:61 → 113
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:133 → 239
    PAS; PAS fold
    cl25986
    Location:332 → 432
    PAS_3; PAS fold

  4. XM_021088678.1 → XP_020944337.1  aryl hydrocarbon receptor nuclear translocator isoform X2

    UniProtKB/TrEMBL
    A0A8D0XIQ1
    Conserved Domains (3) summary
    pfam00010
    Location:82 → 134
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:154 → 260
    PAS; PAS fold
    cl25986
    Location:353 → 453
    PAS_3; PAS fold

  5. XM_013997187.2 → XP_013852641.1  aryl hydrocarbon receptor nuclear translocator isoform X1

    UniProtKB/TrEMBL
    A0A480V9M4, A0A8D0XIQ1
    Conserved Domains (5) summary
    smart00091
    Location:166 → 230
    PAS; PAS domain
    cd00130
    Location:362 → 458
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00010
    Location:91 → 143
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:163 → 269
    PAS; PAS fold
    pfam14598
    Location:362 → 462
    PAS_11; PAS domain

  6. XM_021088679.1 → XP_020944338.1  aryl hydrocarbon receptor nuclear translocator isoform X3

    UniProtKB/TrEMBL
    A0A8D1APS7
    Conserved Domains (3) summary
    pfam00010
    Location:76 → 128
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:148 → 254
    PAS; PAS fold
    cl25986
    Location:347 → 447
    PAS_3; PAS fold

  7. XM_021088681.1 → XP_020944340.1  aryl hydrocarbon receptor nuclear translocator isoform X7

    UniProtKB/TrEMBL
    A0A8D0XIQ1
    Conserved Domains (3) summary
    pfam00010
    Location:90 → 142
    HLH; Helix-loop-helix DNA-binding domain
    pfam00989
    Location:162 → 268
    PAS; PAS fold
    cl25986
    Location:361 → 461
    PAS_3; PAS fold
Nucleotide Protein Strain
Heading Accession and Version

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