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UABP-2 uteroferrin associated basic protein-2 [ Sus scrofa (pig) ]

Gene ID: 396843, updated on 16-Nov-2023

Summary

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Gene symbol
UABP-2
Gene description
uteroferrin associated basic protein-2
See related
Ensembl:ENSSSCG00000022251
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
UFBP
Expression
Biased expression in kidney (RPKM 1.5), mixtures (RPKM 0.3) and 1 other tissue See more
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Genomic context

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See UABP-2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (115685830..115696632, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (122804649..122815354, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene serpin family A member 1 Neighboring gene serpin family A member 11 Neighboring gene serpin A12 Neighboring gene kallistatin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Molecular cloning of the uteroferrin-associated protein, a major progesterone-induced serpin secreted by the porcine uterus, and the expression of its mRNA during pregnancy. Malathy PV, et al. Mol Endocrinol, 1990 Mar. PMID 2342477
  2. Pepsin-inhibitory activity of the uterine serpins. Mathialagan N, et al. Proc Natl Acad Sci U S A, 1996 Nov 26. PMID 8942989, Free PMC Article
  3. Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Gorodkin J, et al. Genome Biol, 2007. PMID 17407547, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uteroferrin-associated basic protein 2
Names
UFAP
uteroferrin-associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213845.3 → NP_999010.3  uteroferrin-associated basic protein 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AEMK02000061
    UniProtKB/TrEMBL
    A0A4X1SHQ8, A0A8D0ZC37, A0A8D1I779, A0A8D1PGH5, A0A8D1Z2N2, F1SCE4
    Related
    ENSSSCP00000002687.3, ENSSSCT00000002756.4
    Conserved Domains (1) summary
    smart00093
    Location:59 → 417
    SERPIN; SERine Proteinase INhibitors

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    115685830..115696632 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P16708.1 GenPept UniProtKB/Swiss-Prot:P16708
P46202.1 GenPept UniProtKB/Swiss-Prot:P46202

Gene LinkOut

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Research Materials