These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

1. NM_001105288.1 → NP_001098758.1  collagen alpha-3(V) chain precursor

   See identical proteins and their annotated locations for NP_001098758.1

   Status: PROVISIONAL

   Source sequence(s)

   AB191305

   UniProtKB/TrEMBL

   A0A8D0SHS9, Q59IP1

   Conserved Domains (3) summary

   pfam01391
   Location:574 → 633

   Collagen; Collagen triple helix repeat (20 copies)

   pfam01410
   Location:1518 → 1746

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:33 → 211

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference Sscrofa11.1 Primary Assembly

Genomic

1. NC_010444.4 Reference Sscrofa11.1 Primary Assembly

   Range

   68828197..68869914 complement

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. XM_021081438.1 → XP_020937097.1  collagen alpha-3(V) chain isoform X2

   UniProtKB/TrEMBL

   A0A8D0SHS9, A0A8D1JU87, A0A8D1M359

   Conserved Domains (3) summary

   pfam01391
   Location:574 → 633

   Collagen; Collagen triple helix repeat (20 copies)

   pfam01410
   Location:1398 → 1626

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:33 → 211

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

2. XM_021081436.1 → XP_020937095.1  collagen alpha-3(V) chain isoform X1

   UniProtKB/TrEMBL

   A0A8D1JU87, F1S3G7

   Related

   ENSSSCP00000014530.4, ENSSSCT00000014931.5

   Conserved Domains (3) summary

   pfam01391
   Location:573 → 632

   Collagen; Collagen triple helix repeat (20 copies)

   pfam01410
   Location:1517 → 1745

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:32 → 210

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

3. XM_021081442.1 → XP_020937101.1  collagen alpha-3(V) chain isoform X3

   UniProtKB/TrEMBL

   A0A8D0SHS9

   Conserved Domains (3) summary

   pfam01391
   Location:574 → 633

   Collagen; Collagen triple helix repeat (20 copies)

   cl02436
   Location:1518 → 1622

   COLFI; Fibrillar collagen C-terminal domain

   cl22861
   Location:33 → 211

   LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

RNA

1. XR_002341044.1 RNA Sequence