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SLCO1A2 solute carrier organic anion transporter family member 1A2 [ Sus scrofa (pig) ]

Gene ID: 397534, updated on 17-Aug-2024

Summary

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Official Symbol
SLCO1A2provided by VGNC
Official Full Name
solute carrier organic anion transporter family member 1A2provided by VGNC
Primary source
VGNC:VGNC:93193
See related
Ensembl:ENSSSCG00000000584
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
OATPA; OATP1A2
Expression
Biased expression in liver (RPKM 6.4) and mixtures (RPKM 2.7) See more
Orthologs
human all
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Genomic context

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See SLCO1A2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
25
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (52020303..52133132)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (55357986..55403096)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene golgi transport 1B Neighboring gene RecQ like helicase Neighboring gene pyridine nucleotide-disulphide oxidoreductase domain 1 Neighboring gene islet amyloid polypeptide Neighboring gene solute carrier organic anion transporter family member 1B2 Neighboring gene uncharacterized LOC100621135

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Cloning and functional characterization of the pig (Sus scrofa) organic anion transporting polypeptide 1a2. Yu Y, et al. Xenobiotica, 2013 Aug. PMID 23323548
  2. Endogenous drug transporters in in vitro and in vivo models for the prediction of drug disposition in man. Goh LB, et al. Biochem Pharmacol, 2002 Dec 1. PMID 12429346
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The cloning and functional characterization of a member of the OATP/Oatp family member obtained from pig (Sus scrofa) liver.
    Title: Cloning and functional characterization of the pig (Sus scrofa) organic anion transporting polypeptide 1a2.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables bile acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sodium-independent organic anion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bile acid and bile salt transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium-independent organic anion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier organic anion transporter family member 1A2
Names
anion transporting polypeptide A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256595.1 → NP_001243524.1  solute carrier organic anion transporter family member 1A2

    See identical proteins and their annotated locations for NP_001243524.1

    Status: PROVISIONAL

    Source sequence(s)
    JQ037799
    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Related
    ENSSSCP00000043522.1, ENSSSCT00000042165.3
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    52020303..52133132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021091167.1 → XP_020946826.1  solute carrier organic anion transporter family member 1A2 isoform X3

    UniProtKB/TrEMBL
    A0A4X1VA65
    Conserved Domains (1) summary
    cl27295
    Location:38 → 517
    OATP; Organic Anion Transporter Polypeptide (OATP) family

  2. XM_021091162.1 → XP_020946821.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  3. XM_021091154.1 → XP_020946813.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  4. XM_021091166.1 → XP_020946825.1  solute carrier organic anion transporter family member 1A2 isoform X3

    UniProtKB/TrEMBL
    A0A4X1VA65
    Conserved Domains (1) summary
    cl27295
    Location:38 → 517
    OATP; Organic Anion Transporter Polypeptide (OATP) family

  5. XM_021091149.1 → XP_020946808.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  6. XM_021091148.1 → XP_020946807.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  7. XM_021091160.1 → XP_020946819.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  8. XM_021091163.1 → XP_020946822.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  9. XM_021091153.1 → XP_020946812.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  10. XM_021091151.1 → XP_020946810.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  11. XM_021091156.1 → XP_020946815.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  12. XM_021091157.1 → XP_020946816.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  13. XM_021091152.1 → XP_020946811.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  14. XM_021091161.1 → XP_020946820.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  15. XM_021091158.1 → XP_020946817.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  16. XM_021091159.1 → XP_020946818.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  17. XM_021091168.1 → XP_020946827.1  solute carrier organic anion transporter family member 1A2 isoform X3

    UniProtKB/TrEMBL
    A0A4X1VA65
    Conserved Domains (1) summary
    cl27295
    Location:38 → 517
    OATP; Organic Anion Transporter Polypeptide (OATP) family

  18. XM_021091150.1 → XP_020946809.1  solute carrier organic anion transporter family member 1A2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1VET9, A0A5K1U410, A0A8D0XDA1
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 623
    oat; sodium-independent organic anion transporter

  19. XM_021091164.1 → XP_020946823.1  solute carrier organic anion transporter family member 1A2 isoform X2

    UniProtKB/TrEMBL
    A0A4X1VA75, A0A8D0X6F0
    Conserved Domains (1) summary
    TIGR00805
    Location:1 → 603
    oat; sodium-independent organic anion transporter

RNA

  1. XR_002343818.1 RNA Sequence

  2. XR_002343819.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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