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CJI96_0002540 DNA-directed_RNA_polymerase_I,_II,_and_III_subunit_RPABC1 [ [Candida] auris ]

Gene ID: 40029227, updated on 1-Aug-2024

Summary

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Gene symbol
CJI96_0002540
Gene description
DNA-directed_RNA_polymerase_I,_II,_and_III_subunit_RPABC1
Locus tag
CJI96_0002540
See related
FungiDB:CJI96_0002540; VEuPathDB:CJI96_0002540
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
[Candida] auris (strain: B11220, nat-host: Homo sapiens, type-material: culture from type material of Candida auris)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Metschnikowiaceae; Metschnikowiaceae incertae sedis; Candida/Metschnikowiaceae
Old locus tag
CJI97_004082
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Genomic context

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See CJI96_0002540 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_072813.1 (2367745..2368386, complement)

Chromosome 2 - NC_072813.1Genomic Context describing neighboring genes Neighboring gene fatty acid elongase ELO2 Neighboring gene 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase Neighboring gene hypothetical_protein Neighboring gene hypothetical_protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_072813.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species. Muñoz JF, et al. Nat Commun, 2018 Dec 17. PMID 30559369, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed_RNA_polymerase_I,_II,_and_III_subunit_RPABC1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_072813.1 Reference assembly

    Range
    2367745..2368386 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029036053.2 → XP_028891295.1  DNA-directed_RNA_polymerase_I,_II,_and_III_subunit_RPABC1 [[Candida] auris]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2H0ZNX3, A0A890CZQ3
    Conserved Domains (1) summary
    cl29798
    Location:1 → 212
    RNA_pol_Rpb5_N; RNA polymerase Rpb5, N-terminal domain
Nucleotide Protein
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