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CLEC20A C-type lectin domain containing 20A [ Homo sapiens (human) ]

Gene ID: 400797, updated on 2-Nov-2024

Summary

Official Symbol
CLEC20Aprovided by HGNC
Official Full Name
C-type lectin domain containing 20Aprovided by HGNC
Primary source
HGNC:HGNC:34521
See related
Ensembl:ENSG00000188585 AllianceGenome:HGNC:34521
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00083; NCRNA00083
Summary
Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in testis (RPKM 2.0), lymph node (RPKM 0.7) and 14 other tissues See more
Orthologs
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Genomic context

See CLEC20A in Genome Data Viewer
Location:
1q25.2
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (178478792..178499623, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (177833333..177854346, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (178448375..178466099, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene RAS protein activator like 2 Neighboring gene uncharacterized LOC105371629 Neighboring gene NANOG hESC enhancer GRCh37_chr1:178313926-178314494 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:178386599-178387798 Neighboring gene ribosomal protein S14 pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:178452792-178452968 Neighboring gene MPRA-validated peak476 silencer Neighboring gene uncharacterized LOC101928866 Neighboring gene negCOR silencer S4 Neighboring gene testis expressed 35

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
putative C-type lectin domain family 20 member A
Names
C-type lectin domain family 20 member A
long intergenic non-protein coding RNA 83

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001395331.1NP_001382260.1  putative C-type lectin domain family 20 member A precursor

    Status: VALIDATED

    Source sequence(s)
    AL035702, KF455100
    Consensus CDS
    CCDS91118.1
    UniProtKB/Swiss-Prot
    A0A1B0GWE9, Q6ZU45
    Related
    ENSP00000490899.1, ENST00000623247.3
    Conserved Domains (2) summary
    cd03602
    Location:22132
    CLECT_1; C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins
    cl02432
    Location:162275
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    178478792..178499623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035861181.2XP_035717074.1  putative C-type lectin domain family 20 member A isoform X2

    Conserved Domains (2) summary
    cd03602
    Location:69179
    CLECT_1; C-type lectin (CTL)/C-type lectin-like (CTLD) domain subgroup 1; a subgroup of protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins
    cl02432
    Location:209322
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
  2. XM_047420517.1XP_047276473.1  putative C-type lectin domain family 20 member A isoform X7

  3. XM_047420506.1XP_047276462.1  putative C-type lectin domain family 20 member A isoform X6

  4. XM_047420496.1XP_047276452.1  putative C-type lectin domain family 20 member A isoform X1

  5. XM_047420505.1XP_047276461.1  putative C-type lectin domain family 20 member A isoform X5

  6. XM_047420503.1XP_047276459.1  putative C-type lectin domain family 20 member A isoform X4

  7. XM_047420502.1XP_047276458.1  putative C-type lectin domain family 20 member A isoform X3

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    177833333..177854346 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054336584.1XP_054192559.1  putative C-type lectin domain family 20 member A isoform X2

  2. XM_054336589.1XP_054192564.1  putative C-type lectin domain family 20 member A isoform X7

  3. XM_054336588.1XP_054192563.1  putative C-type lectin domain family 20 member A isoform X6

  4. XM_054336583.1XP_054192558.1  putative C-type lectin domain family 20 member A isoform X1

  5. XM_054336587.1XP_054192562.1  putative C-type lectin domain family 20 member A isoform X5

  6. XM_054336586.1XP_054192561.1  putative C-type lectin domain family 20 member A isoform X4

  7. XM_054336585.1XP_054192560.1  putative C-type lectin domain family 20 member A isoform X3

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001001689.1: Suppressed sequence

    Description
    NM_001001689.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.