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TMPRSS11BNL TMPRSS11B N-terminal like (pseudogene) [ Homo sapiens (human) ]

Gene ID: 401136, updated on 17-Sep-2024

Summary

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Official Symbol
TMPRSS11BNLprovided by HGNC
Official Full Name
TMPRSS11B N-terminal like (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:37262
See related
Ensembl:ENSG00000250026 AllianceGenome:HGNC:37262
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward esophagus (RPKM 6.7) See more
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Genomic context

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See TMPRSS11BNL in Genome Data Viewer
Location:
4q13.2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (68184129..68218080, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (71627302..71658360, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (69049847..69083798, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene transmembrane serine protease 11F Neighboring gene uncharacterized LOC550113 Neighboring gene solute carrier family 47 member 2 pseudogene Neighboring gene synaptotagmin 14 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr4:68979095-68979596 Neighboring gene ferritin light chain pseudogene 10 Neighboring gene transmembrane serine protease 11B Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:69137738-69138313 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:69138314-69138888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:69143050-69143592 Neighboring gene UDP glucuronosyltransferase family 2 member B11 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • TMPRSS11B N terminal-like
  • TMPRSS11B N-terminus-like protein
  • transmembrane protease serine 11B-like protein
  • transmembrane protease, serine 11B pseudogene

Clone Names

  • FLJ41562

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104048.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098799
    Related
    ENST00000514295.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    68184129..68218080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    71627302..71658360 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_025118.1: Suppressed sequence

    Description
    NG_025118.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

  2. NM_001129907.2: Suppressed sequence

    Description
    NM_001129907.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

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