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LOC401324 uncharacterized LOC401324 [ Homo sapiens (human) ]

Gene ID: 401324, updated on 10-Oct-2023

Summary

Gene symbol
LOC401324
Gene description
uncharacterized LOC401324
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LOC401324 in Genome Data Viewer
Location:
7p14.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (35313855..35376476)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (35454927..35517511)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (35353466..35416086)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene DPY19L2 pseudogene 1 Neighboring gene S100A11 pseudogene 2 Neighboring gene VISTA enhancer hs466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:35288961-35289528 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:35289529-35290094 Neighboring gene T-box transcription factor 20 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:35292632-35293208 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr7:35296083-35296894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:35296895-35297706 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:35297707-35298518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:35298519-35299329 Neighboring gene VISTA enhancer hs1659 Neighboring gene VISTA enhancer hs2286 Neighboring gene uncharacterized LOC105375230 Neighboring gene VISTA enhancer hs461 Neighboring gene VISTA enhancer hs472 Neighboring gene VISTA enhancer hs463 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18095 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:35614811-35615311 Neighboring gene uncharacterized LOC124901614

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Whole genome association scan for genetic polymorphisms influencing information processing speed.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038864.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007652, AC009531

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    35313855..35376476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    35454927..35517511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)