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ZNF833P zinc finger protein 833, pseudogene [ Homo sapiens (human) ]

Gene ID: 401898, updated on 2-Nov-2024

Summary

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Official Symbol
ZNF833Pprovided by HGNC
Official Full Name
zinc finger protein 833, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:33819
See related
Ensembl:ENSG00000197332 AllianceGenome:HGNC:33819
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZNF833
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in regulation of gene expression. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See ZNF833P in Genome Data Viewer
Location:
19p13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (11673998..11686569)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (11802168..11814739)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (11784813..11797384)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 887, pseudogene Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:11785131-11785688 Neighboring gene CRISPRi-validated cis-regulatory element chr19.1989 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10126 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10127 Neighboring gene zinc finger protein 823 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14031 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10128 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14032 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:11849745-11849939 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14033 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10129 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10130 Neighboring gene uncharacterized LOC124904639 Neighboring gene zinc finger protein 441

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A GO catalogue of human DNA-binding transcription factors. Lovering RC, et al. Biochim Biophys Acta Gene Regul Mech, 2021 Nov-Dec. PMID 34673265
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • CTC-499B15.5
  • zinc finger protein pseudogene

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity NAS
Non-traceable Author Statement
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028594.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008543, AI623739, DA526679
    Related
    ENST00000747619.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    11673998..11686569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    11802168..11814739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001013691.2: Suppressed sequence

    Description
    NM_001013691.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6ZTB9.1 GenPept UniProtKB/Swiss-Prot:Q6ZTB9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials