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LINC01000 long intergenic non-protein coding RNA 1000 [ Homo sapiens (human) ]

Gene ID: 402483, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01000provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1000provided by HGNC
Primary source
HGNC:HGNC:38541
See related
AllianceGenome:HGNC:38541
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in bone marrow (RPKM 13.5), testis (RPKM 13.4) and 25 other tissues See more
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Genomic context

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See LINC01000 in Genome Data Viewer
Location:
7q32.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (128641241..128660998)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (129953762..129973546)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (128281295..128301052)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:128215887-128216564 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:128216565-128217242 Neighboring gene ribosomal protein S10 pseudogene 15 Neighboring gene MPRA-validated peak6716 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr7:128238320-128238483 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:128255459-128255655 Neighboring gene RNA, U6 small nuclear 177, pseudogene Neighboring gene capicua transcriptional repressor pseudogene 14 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18611 Neighboring gene golgi associated RAB2 interactor 1A Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:128333635-128334135 Neighboring gene RNA, 5S ribosomal pseudogene 242 Neighboring gene IMP3 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Clone Names

  • FLJ45340, FLJ53525

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024368.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC018638, AK302487, AK304049

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    128641241..128660998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    129953762..129973546
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039682.2: Suppressed sequence

    Description
    NM_001039682.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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