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Msantd1 Myb/SANT-like DNA-binding domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 403174, updated on 2-Nov-2024

Summary

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Official Symbol
Msantd1provided by MGI
Official Full Name
Myb/SANT-like DNA-binding domain containing 1provided by MGI
Primary source
MGI:MGI:2684990
See related
Ensembl:ENSMUSG00000051246 AllianceGenome:MGI:2684990
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm144; A930005I04Rik
Summary
Predicted to be involved in positive regulation of DNA-templated transcription. Predicted to be active in nuclear body. Is expressed in ductus deferens; epididymis; esophagus; and testis. Orthologous to human MSANTD1 (Myb/SANT DNA binding domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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See Msantd1 in Genome Data Viewer
Location:
5 B2; 5 17.94 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (35071581..35084333)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (34914593..34926989)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor kinase 4 Neighboring gene microRNA 467g Neighboring gene STARR-positive B cell enhancer ABC_E1050 Neighboring gene huntingtin Neighboring gene STARR-seq mESC enhancer starr_12848 Neighboring gene regulator of G-protein signaling 12 Neighboring gene STARR-seq mESC enhancer starr_12849 Neighboring gene microRNA 3097 Neighboring gene hepatocyte growth factor activator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  4. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nuclear body IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
myb/SANT-like DNA-binding domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310550.1 → NP_001297479.1  myb/SANT-like DNA-binding domain-containing protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001297479.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AK044284, AW490053
    Consensus CDS
    CCDS80265.1
    UniProtKB/TrEMBL
    A0A0J9YU52
    Related
    ENSMUSP00000144008.2, ENSMUST00000202205.2
    Conserved Domains (1) summary
    pfam13837
    Location:44 → 116
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  2. NM_207277.1 → NP_997160.1  myb/SANT-like DNA-binding domain-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_997160.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK044284
    Consensus CDS
    CCDS19221.1
    UniProtKB/Swiss-Prot
    Q8BIL2
    Related
    ENSMUSP00000057362.2, ENSMUST00000050535.2
    Conserved Domains (1) summary
    pfam13837
    Location:43 → 125
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    35071581..35084333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036165260.1 → XP_036021153.1  myb/SANT-like DNA-binding domain-containing protein 1 isoform X4

    Conserved Domains (1) summary
    pfam13837
    Location:31 → 96
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  2. XM_017320960.2 → XP_017176449.1  myb/SANT-like DNA-binding domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A0J9YU52
    Conserved Domains (1) summary
    pfam13837
    Location:44 → 116
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  3. XM_011240753.3 → XP_011239055.1  myb/SANT-like DNA-binding domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011239055.1

    UniProtKB/TrEMBL
    A0A1D5RLV8
    Related
    ENSMUSP00000148522.2, ENSMUST00000212362.2
    Conserved Domains (1) summary
    pfam13837
    Location:31 → 118
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

  4. XM_006504012.4 → XP_006504075.1  myb/SANT-like DNA-binding domain-containing protein 1 isoform X2

    Conserved Domains (1) summary
    pfam13837
    Location:1 → 81
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BIL2.1 GenPept UniProtKB/Swiss-Prot:Q8BIL2

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