PNN pinin, desmosome associated protein [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: PNNprovided by VGNC
Official Full Name: pinin, desmosome associated proteinprovided by VGNC
Primary source: VGNC:VGNC:44748
See related: Ensembl:ENSCAFG00845003456
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	8	NC_051812.1 (17476472..17483943)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	8	NC_006590.4 (17165180..17172638)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	8	NC_049229.1 (17522086..17529559)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	8	NC_049268.1 (17163819..17171283)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	8	NC_049749.1 (17235495..17242966)

Chromosome 8 - NC_051812.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

G54093 (e-PCR)
- UniSTS:109330

NoName (e-PCR)
- UniSTS:532324

Pnn (e-PCR), detects polymorphism
- UniSTS:532324

RH44450 (e-PCR)
- UniSTS:53613

G20375 (e-PCR)
- UniSTS:20088

A005O20 (e-PCR)
- UniSTS:20089

PNN (e-PCR)
- UniSTS:503183

D12Ertd512e (e-PCR), detects polymorphism
- UniSTS:167090

EST6D10 (e-PCR)
- UniSTS:263395

Gene Ontology Provided by RefSeq

Component	Evidence Code	Pubs
part_of catalytic step 2 spliceosome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: pinin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001003231.2 → NP_001003231.2 pinin

Status: VALIDATED

Source sequence(s)

AAEX03005688

UniProtKB/TrEMBL

A0A8P0NFV8, Q06SM5

Related

ENSCAFP00845004891.1, ENSCAFT00845006147.1

Conserved Domains (2) summary

pfam04696
Location:136 → 261

Pinin_SDK_memA; pinin/SDK/memA/ protein conserved region

pfam04697
Location:5 → 132

Pinin_SDK_N; pinin/SDK conserved region