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WDFY3-AS2 WDFY3 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 404201, updated on 22-Oct-2024

Summary

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Official Symbol
WDFY3-AS2provided by HGNC
Official Full Name
WDFY3 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:21603
See related
Ensembl:ENSG00000180769 AllianceGenome:HGNC:21603
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FBI4; C4orf12; NCRNA00247
Expression
Broad expression in kidney (RPKM 6.9), brain (RPKM 4.7) and 17 other tissues See more
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Genomic context

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See WDFY3-AS2 in Genome Data Viewer
Location:
4q21.23
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (84965616..85008743)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (88295634..88338762)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (85886769..85929896)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene WD repeat and FYVE domain containing 3 Neighboring gene WDFY3 antisense RNA 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:85777520-85778150 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:85791021-85791555 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:85791556-85792089 Neighboring gene RNA, U6 small nuclear 469, pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:85848560-85849074 Neighboring gene RN7SK pseudogene 48 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:86087809-86088309 Neighboring gene quinone oxidoreductase-like protein 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Immunity-related long noncoding RNA WDFY3-AS2 inhibited cell proliferation and metastasis through Wnt/beta-catenin signaling in oral squamous cell carcinoma.
    Title: Immunity-related long noncoding RNA WDFY3-AS2 inhibited cell proliferation and metastasis through Wnt/β-catenin signaling in oral squamous cell carcinoma.
  2. LncRNA WDFY3-AS2 suppresses proliferation and invasion in oesophageal squamous cell carcinoma by regulating miR-2355-5p/SOCS2 axis.
    Title: LncRNA WDFY3-AS2 suppresses proliferation and invasion in oesophageal squamous cell carcinoma by regulating miR-2355-5p/SOCS2 axis.
  3. USF1-induced overexpression of long noncoding RNA WDFY3-AS2 promotes lung adenocarcinoma progression via targeting miR-491-5p/ZNF703 axis.
    Title: USF1-induced overexpression of long noncoding RNA WDFY3-AS2 promotes lung adenocarcinoma progression via targeting miR-491-5p/ZNF703 axis.
  4. WDFY3-AS2, BDNF-AS and AFAP1-AS1 as potential prognostic factors for patients with triple-negative breast tumors
    Title: In silico analyses identify lncRNAs: WDFY3-AS2, BDNF-AS and AFAP1-AS1 as potential prognostic factors for patients with triple-negative breast tumors.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • WDFY3 antisense RNA 2 (non-protein coding)

Clone Names

  • MGC120078, MGC120079

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015359.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108021
    Related
    ENST00000652490.3

  2. NR_152771.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108021
    Related
    ENST00000652207.2

  3. NR_152772.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108021
    Related
    ENST00000652474.2

  4. NR_152773.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108021
    Related
    ENST00000650984.1

  5. NR_152774.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108021
    Related
    ENST00000651773.2

  6. NR_152775.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108021

  7. NR_152776.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108021, AY250185, BC019264, BC033127, BX104489, DA127567

  8. NR_152778.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108021
    Related
    ENST00000318186.8

  9. NR_152779.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108021
    Related
    ENST00000652312.2

  10. NR_152780.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108021
    Related
    ENST00000652652.2

  11. NR_152781.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108021
    Related
    ENST00000651209.1

  12. NR_152782.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108021
    Related
    ENST00000652610.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    84965616..85008743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    88295634..88338762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_205857.1: Suppressed sequence

    Description
    NM_205857.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate and encodes a protein of 99 amino acids that lacks homolog support.
Nucleotide Protein
Heading Accession and Version

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