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LINC00595 long intergenic non-protein coding RNA 595 [ Homo sapiens (human) ]

Gene ID: 414243, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00595provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 595provided by HGNC
Primary source
HGNC:HGNC:31430
See related
Ensembl:ENSG00000230417 AllianceGenome:HGNC:31430
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf101
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
10q22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (78267342..78280213)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (79136415..79149280)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (80027099..80039970)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902467 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80011981-80012494 Neighboring gene long intergenic non-protein coding RNA 856 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:80015479-80016678 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80026770-80027320 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80027321-80027869 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:80052421-80053352 Neighboring gene uncharacterized LOC124902468 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:80088023-80088524 Neighboring gene uncharacterized LOC124902568

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome analysis of human gastric cancer. Oh JH, et al. Mamm Genome, 2005 Dec. PMID 16341674
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_073447.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC010163
    Related
    ENST00000476909.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    78267342..78280213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    79136415..79149280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases