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LINC00593 long intergenic non-protein coding RNA 593 [ Homo sapiens (human) ]

Gene ID: 414926, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00593provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 593provided by HGNC
Primary source
HGNC:HGNC:32382
See related
Ensembl:ENSG00000245750 AllianceGenome:HGNC:32382
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C15orf50
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
15q23
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (69835234..69842967)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (67657441..67665178)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (70127573..70135306)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984788 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9663 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:70086634-70087136 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:70090778-70091977 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:70097321-70097517 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70106110-70106935 Neighboring gene gem nuclear organelle associated protein 8 pseudogene 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:70112963-70113484 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70114007-70114528 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70135718-70136359 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70142408-70142923 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:70145330-70146529 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9664 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70208404-70208905 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70211725-70212348 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70212349-70212971 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70235717-70236216 Neighboring gene uncharacterized LOC101929129 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9665 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9666 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:70282987-70283875 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70292527-70293028 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:70307241-70307744 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9667 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_40838 Neighboring gene uncharacterized LOC124903518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:70324572-70325184

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Clone Names

  • MGC42951

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026764.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021818
    Related
    ENST00000560853.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    69835234..69842967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    67657441..67665178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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