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rd rubredoxin [ Pyrococcus furiosus DSM 3638 ]

Gene ID: 41713086, updated on 24-Oct-2024

Summary

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Gene symbol
rd
Gene description
rubredoxin
Locus tag
PFDSM3638_RS06420
Gene type
protein coding
Organism
Pyrococcus furiosus DSM 3638 (strain: DSM 3638, culture-collection: DSM:3638, type-material: type strain of Pyrococcus furiosus)
Lineage
Archaea; Methanobacteriati; Methanobacteriota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus
Old locus tag
PFDSM3638_06395
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Genomic context

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NZ_CP023154.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene superoxide reductase SorA Neighboring gene rubrerythrin family protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP023154.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Contribution of surface salt bridges to protein stability. Strop P, et al. Biochemistry, 2000 Feb 15. PMID 10684603
  2. Determinants of protein hyperthermostability: purification and amino acid sequence of rubredoxin from the hyperthermophilic archaebacterium Pyrococcus furiosus and secondary structure of the zinc adduct by NMR. Blake PR, et al. Biochemistry, 1991 Nov 12. PMID 1932012
  3. Comparison of the X-ray structure of native rubredoxin from Pyrococcus furiosus with the NMR structure of the zinc-substituted protein. Blake PR, et al. Protein Sci, 1992 Nov. PMID 1303770, Free PMC Article
  4. Solution-state structure by NMR of zinc-substituted rubredoxin from the marine hyperthermophilic archaebacterium Pyrococcus furiosus. Blake PR, et al. Protein Sci, 1992 Nov. PMID 1303769, Free PMC Article
  5. X-ray crystal structures of the oxidized and reduced forms of the rubredoxin from the marine hyperthermophilic archaebacterium Pyrococcus furiosus. Day MW, et al. Protein Sci, 1992 Nov. PMID 1303768, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
rubredoxin

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP023154.1 Reference assembly

    Range
    1193902..1194066 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_011012426.1 rubredoxin [Pyrococcus furiosus]

    See identical proteins and their annotated locations for WP_011012426.1

    UniProtKB/Swiss-Prot
    P24297, Q9UWP6
    UniProtKB/TrEMBL
    A0A5C0XPK3, I6UQC8
    Conserved Domains (1) summary
    cd00730
    Location:3 → 52
    rubredoxin; Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P24297.2

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Molecular Biology Databases