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Gm5458 predicted gene 5458 [ Mus musculus (house mouse) ]

Gene ID: 432825, updated on 10-Oct-2024

Summary

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Official Symbol
Gm5458provided by MGI
Official Full Name
predicted gene 5458provided by MGI
Primary source
MGI:MGI:3646663
See related
Ensembl:ENSMUSG00000095024 AllianceGenome:MGI:3646663
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG432825
Expression
Restricted expression toward testis adult (RPKM 27.7) See more
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Genomic context

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See Gm5458 in Genome Data Viewer
Location:
14 A3; 14 10.16 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (19644206..19652655, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (19594138..19602587, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 48105 Neighboring gene predicted gene 2244 Neighboring gene predicted gene 2237 Neighboring gene predicted gene, 41102 Neighboring gene STARR-seq mESC enhancer starr_36074 Neighboring gene prostaglandin D receptor pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Takusan: a large gene family that regulates synaptic activity. Tu S, et al. Neuron, 2007 Jul 5. PMID 17610818, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
alpha takusan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024706.2 → NP_001019877.2  alpha takusan-like isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC174797
    Consensus CDS
    CCDS49405.1
    UniProtKB/TrEMBL
    K7N6Y0, L7N219
    Related
    ENSMUSP00000093833.6, ENSMUST00000096121.12
    Conserved Domains (1) summary
    pfam04822
    Location:50 → 125
    Takusan; Takusan

  2. NM_001403651.1 → NP_001390580.1  alpha takusan-like isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC174797

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    19644206..19652655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247878.1 → XP_030103738.1  alpha takusan-like isoform X2

    UniProtKB/TrEMBL
    Q6P8Z5
    Conserved Domains (1) summary
    pfam04822
    Location:48 → 128
    Takusan
Nucleotide Protein
Heading Accession and Version

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