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LOC4332464 two-component response regulator-like PRR73 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332464, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4332464
Gene description
two-component response regulator-like PRR73
Locus tag
OSNPB_030284100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PRR73; OsPRR73
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Genomic context

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See LOC4332464 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9810234..9819357, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9759583..9768679, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase PBL27 Neighboring gene elongator complex protein 6 Neighboring gene large ribosomal subunit protein uL10c Neighboring gene mitochondrial hydrolase YKR070W

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The transcriptional repressor OsPRR73 links circadian clock and photoperiod pathway to control heading date in rice. Liang L, et al. Plant Cell Environ, 2021 Mar. PMID 33377200
  2. Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis. Wei H, et al. EMBO J, 2021 Feb 1. PMID 33347628, Free PMC Article
  3. Circadian-associated rice pseudo response regulators (OsPRRs): insight into the control of flowering time. Murakami M, et al. Biosci Biotechnol Biochem, 2005 Feb. PMID 15725670
  4. The evolutionarily conserved OsPRR quintet: rice pseudo-response regulators implicated in circadian rhythm. Murakami M, et al. Plant Cell Physiol, 2003 Nov. PMID 14634161
  5. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis.
    Title: Clock component OsPRR73 positively regulates rice salt tolerance by modulating OsHKT2;1-mediated sodium homeostasis.
  2. The transcriptional repressor OsPRR73 links circadian clock and photoperiod pathway to control heading date in rice.
    Title: The transcriptional repressor OsPRR73 links circadian clock and photoperiod pathway to control heading date in rice.
Submit: New GeneRIF Correction

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphorelay signal transduction system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
two-component response regulator-like PRR73
Names
LOC_Os03g17570
pseudo-response regulator 73

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402130.1 → NP_001389059.1  two-component response regulator-like PRR73 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK068603, AK121136, AU093923, CB646363
    UniProtKB/Swiss-Prot
    Q10N34
    UniProtKB/TrEMBL
    B9F7P0

  2. NM_001402131.1 → NP_001389060.1  two-component response regulator-like PRR73 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK121136, AU093923, CB646363, CI569021
    UniProtKB/TrEMBL
    Q10N33

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    9810234..9819357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066308135.1 → XP_066164232.1  two-component response regulator-like PRR73 isoform X1

    UniProtKB/Swiss-Prot
    Q10N34
    UniProtKB/TrEMBL
    B9F7P0

  2. XM_015775212.3 → XP_015630698.1  two-component response regulator-like PRR73 isoform X1

    UniProtKB/Swiss-Prot
    A2XFB7, Q10N34, Q689G4, Q689G7, Q8H8T5
    UniProtKB/TrEMBL
    B9F7P0
    Conserved Domains (2) summary
    cd17582
    Location:83 → 186
    psREC_PRR; pseudo receiver domain of pseudo-response regulators
    pfam06203
    Location:712 → 755
    CCT; CCT motif

  3. XM_066308133.1 → XP_066164230.1  two-component response regulator-like PRR73 isoform X1

    UniProtKB/Swiss-Prot
    Q10N34
    UniProtKB/TrEMBL
    B9F7P0

  4. XM_066308136.1 → XP_066164233.1  two-component response regulator-like PRR73 isoform X2

  5. XM_066308134.1 → XP_066164231.1  two-component response regulator-like PRR73 isoform X1

    UniProtKB/Swiss-Prot
    Q10N34
    UniProtKB/TrEMBL
    B9F7P0

  6. XM_015775211.3 → XP_015630697.1  two-component response regulator-like PRR73 isoform X1

    UniProtKB/Swiss-Prot
    A2XFB7, Q10N34, Q689G4, Q689G7, Q8H8T5
    UniProtKB/TrEMBL
    B9F7P0
    Conserved Domains (2) summary
    cd17582
    Location:83 → 186
    psREC_PRR; pseudo receiver domain of pseudo-response regulators
    pfam06203
    Location:712 → 755
    CCT; CCT motif

  7. XM_066308137.1 → XP_066164234.1  two-component response regulator-like PRR73 isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q10N34.1 GenPept UniProtKB/Swiss-Prot:Q10N34

Gene LinkOut

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Molecular Biology Databases
Research Materials