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LOC4340809 uncharacterized LOC4340809 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4340809, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4340809
Gene description
uncharacterized LOC4340809
Locus tag
OSNPB_060297700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4340809 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (11219787..11222951)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (11040009..11043237)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269758 Neighboring gene nucleotide-sugar uncharacterized transporter 2 Neighboring gene C2 and GRAM domain-containing protein At1g03370 Neighboring gene uncharacterized LOC9272020

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4340809
Names
OSJNBa0055N24.35
Os06g0297700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    11219787..11222951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787579.3 → XP_015643065.1  uncharacterized protein LOC4340809

    UniProtKB/TrEMBL
    A0A0P0WVJ4, Q5Z6I5
    Conserved Domains (1) summary
    cl00465
    Location:439 → 648
    UPF0118; Domain of unknown function DUF20
Nucleotide Protein
Heading Accession and Version

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