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LOC4341353 uncharacterized LOC4341353 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341353, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341353
Gene description
uncharacterized LOC4341353
Locus tag
OSNPB_060571300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0610D01.9
Expression
Ubiquitous expression in flower buds (RPKM 10.8), flowers (RPKM 10.3) and 6 other tissues See more
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Genomic context

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See LOC4341353 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (22988786..22992932)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (22129978..22134169)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene putative transcription factor bHLH041 Neighboring gene histone deacetylase 2 Neighboring gene elongation factor 1-gamma 3-like Neighboring gene protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4341353
Names
OSJNBa0006A22.1
Os06g0571300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    22988786..22992932
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785761.3 → XP_015641247.1  uncharacterized protein LOC4341353

    UniProtKB/TrEMBL
    B9FTU7
Nucleotide Protein
Heading Accession and Version

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