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LOC4341364 serine/threonine-protein phosphatase PP2A-1 catalytic subunit-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341364, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4341364
Gene description
serine/threonine-protein phosphatase PP2A-1 catalytic subunit-like
Locus tag
OSNPB_060574500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PP2A1; OsJ_020918
Expression
Ubiquitous expression in roots before flowering (RPKM 55.1), leaves after flowering (RPKM 47.5) and 6 other tissues See more
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Genomic context

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See LOC4341364 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (23165914..23172183)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (22307127..22313388)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939338 Neighboring gene transcriptional elongation regulator MINIYO Neighboring gene putative receptor protein kinase ZmPK1 Neighboring gene uncharacterized LOC4341367 Neighboring gene putative receptor protein kinase ZmPK1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein phosphatase PP2A-1 catalytic subunit
Names
LOC_Os06g37660
OSJNBa0006A22.44
NP_001408564.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421635.1 → NP_001408564.1  serine/threonine-protein phosphatase PP2A-1 catalytic subunit

    Status: VALIDATED

    Source sequence(s)
    AU092758, CF304693, CI306097, CI313667, CI649216
    UniProtKB/Swiss-Prot
    A0A0P0WY45, A2YEB4, Q0DBD3, Q42981, Q5Z7K2, Q9ZSS3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    23165914..23172183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0DBD3.1 GenPept UniProtKB/Swiss-Prot:Q0DBD3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials