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LOC4341377 uncharacterized LOC4341377 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341377, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341377
Gene description
uncharacterized LOC4341377
Locus tag
OSNPB_060580100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves after flowering (RPKM 1704.6), roots after flowering (RPKM 1408.3) and 5 other tissues See more
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Genomic context

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See LOC4341377 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (23472795..23476280)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (22613780..22617417)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene ethylene receptor 3-like Neighboring gene uncharacterized LOC136351240 Neighboring gene protein NRT1/ PTR FAMILY 4.6 Neighboring gene uncharacterized LOC4341379

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4341377
Names
Os06g0580100
P0566A10.17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    23472795..23476280
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015788060.3 → XP_015643546.1  uncharacterized protein LOC4341377 isoform X2

    UniProtKB/TrEMBL
    A0A0P0WY18, Q0DBC3, Q5VPM5

  2. XM_066311502.1 → XP_066167599.1  uncharacterized protein LOC4341377 isoform X1

Nucleotide Protein
Heading Accession and Version

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Research Materials