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LOC4341380 probable LRR receptor-like serine/threonine-protein kinase At3g47570 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4341380, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4341380
Gene description
probable LRR receptor-like serine/threonine-protein kinase At3g47570
Locus tag
OSNPB_060581500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0498C03.1
Expression
Biased expression in roots after flowering (RPKM 1040.1), leaves after flowering (RPKM 633.0) and 1 other tissue See more
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Genomic context

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See LOC4341380 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (23569777..23573537, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (22710838..22714661, complement)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 4.6 Neighboring gene uncharacterized LOC4341379 Neighboring gene uncharacterized LOC136356923 Neighboring gene uncharacterized LOC9268915 Neighboring gene uncharacterized LOC107281331

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable LRR receptor-like serine/threonine-protein kinase At3g47570
Names
Os06g0581500
P0566A10.35
putative protein kinase Xa21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    23569777..23573537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015786000.2 → XP_015641486.1  probable LRR receptor-like serine/threonine-protein kinase At3g47570

    UniProtKB/TrEMBL
    A3BD23, Q5VPA8
    Conserved Domains (6) summary
    PLN00113
    Location:5 → 1125
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    cd00116
    Location:561 → 722
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:711 → 722
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:132 → 155
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08263
    Location:38 → 76
    LRRNT_2; Leucine rich repeat N-terminal domain
    cl21453
    Location:829 → 1127
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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