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LOC4344698 mitogen-activated protein kinase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344698, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4344698
Gene description
mitogen-activated protein kinase 2
Locus tag
OSNPB_080157000
Gene type
protein coding
RefSeq status
INFERRED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
MPK2
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Genomic context

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See LOC4344698 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (3354265..3357342)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (3307514..3310591)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL34 Neighboring gene small nucleolar RNA snR60/Z15/Z230/Z193/J17 Neighboring gene meiotic recombination protein SPO11-2-like Neighboring gene protein PAF1 homolog Neighboring gene brassinosteroid-responsive RING protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables MAP kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitogen-activated protein kinase 2
Names
LOC_Os08g06060
MAP kinase 2
P0438H08.24
putative mitogen-activated protein kinase 4
NP_001409369.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001422440.1 → NP_001409369.1  mitogen-activated protein kinase 2

    Status: INFERRED

    Source sequence(s)
    AP014964
    UniProtKB/Swiss-Prot
    Q0J7X3, Q5J4W4, Q6ZD93

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    3354265..3357342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5J4W4.1 GenPept UniProtKB/Swiss-Prot:Q5J4W4

Gene LinkOut

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Molecular Biology Databases
Research Materials