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LOC4344713 protein LSD1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4344713, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4344713
Gene description
protein LSD1-like
Locus tag
OSNPB_080159500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
LSD1; OsLSD1; OsJ_26122
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Genomic context

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See LOC4344713 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (3507463..3511619, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (3460721..3464851, complement)

Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene transcription factor MAMYB Neighboring gene uncharacterized LOC136351390 Neighboring gene tobamovirus multiplication protein 2A Neighboring gene AT-hook motif nuclear-localized protein 23 Neighboring gene zinc finger CCCH domain-containing protein 56

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. OsLSD1, a rice zinc finger protein, regulates programmed cell death and callus differentiation. Wang L, et al. Mol Plant Microbe Interact, 2005 May. PMID 15915636
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein LSD1
Names
LOC_Os08g06280
Protein LESION SIMULATING DISEASE 1
Putative zinc finger LSD1
zinc finger protein LSD1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403485.1 → NP_001390414.1  protein LSD1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AU096910, CI297424, CI592429, D21921

  2. NM_001403486.1 → NP_001390415.1  protein LSD1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK111759, AU032742
    UniProtKB/Swiss-Prot
    A0A0N7KPB1, Q0J7V9, Q6QUK7, Q704V4

  3. NM_001403487.1 → NP_001390416.1  protein LSD1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AK111759, CI544919, CI594380
    UniProtKB/TrEMBL
    B8BAX2

  4. NM_001403488.1 → NP_001390417.1  protein LSD1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    CF335604, CF335605, CI699345
    UniProtKB/TrEMBL
    B8BAX2

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

    Range
    3507463..3511619 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015792625.3 → XP_015648111.1  protein LSD1 isoform X2

    UniProtKB/TrEMBL
    B8BAX2
    Conserved Domains (1) summary
    pfam06943
    Location:66 → 90
    zf-LSD1; LSD1 zinc finger

  2. XM_015792624.3 → XP_015648110.1  protein LSD1 isoform X2

    UniProtKB/TrEMBL
    B8BAX2
    Conserved Domains (1) summary
    pfam06943
    Location:66 → 90
    zf-LSD1; LSD1 zinc finger

  3. XM_015792621.3 → XP_015648107.1  protein LSD1 isoform X1

    Conserved Domains (1) summary
    pfam06943
    Location:124 → 148
    zf-LSD1; LSD1 zinc finger

RNA

  1. XR_010742874.1 RNA Sequence

  2. XR_010742873.1 RNA Sequence

  3. XR_010742871.1 RNA Sequence

  4. XR_010742872.1 RNA Sequence

  5. XR_010742870.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0J7V9.1 GenPept UniProtKB/Swiss-Prot:Q0J7V9

Gene LinkOut

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