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Gm5646 predicted pseudogene 5646 [ Mus musculus (house mouse) ]

Gene ID: 434879, updated on 22-Oct-2024

Summary

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Official Symbol
Gm5646provided by MGI
Official Full Name
predicted pseudogene 5646provided by MGI
Primary source
MGI:MGI:3643220
See related
Ensembl:ENSMUSG00000143136 AllianceGenome:MGI:3643220
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG434879
Expression
Restricted expression toward testis adult (RPKM 14.1) See more
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Genomic context

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See Gm5646 in Genome Data Viewer
Location:
X F3; X 72.38 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (153181243..153185158)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (154398247..154402162)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene 15141 Neighboring gene STARR-seq mESC enhancer starr_48125 Neighboring gene spermatogenesis associated multipass transmembrane protein 2b Neighboring gene STARR-seq mESC enhancer starr_48127 Neighboring gene STARR-seq mESC enhancer starr_48128 Neighboring gene STARR-seq mESC enhancer starr_48129 Neighboring gene RELT tumor necrosis factor receptor pseudogene Neighboring gene spermatogenesis associated multipass transmembrane protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_165457.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX005255
    Related
    ENSMUST00000374985.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    153181243..153185158
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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