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LOC4351805 uncharacterized LOC4351805 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4351805, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4351805
Gene description
uncharacterized LOC4351805
Locus tag
OSNPB_120223300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
cb5-1
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Genomic context

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See LOC4351805 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (6715658..6717750)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (6677574..6679932)

Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene receptor like protein 22 Neighboring gene receptor-like protein 43 Neighboring gene uncharacterized LOC136354667 Neighboring gene uncharacterized LOC136354666

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4351805
Names
Os12g0223300
cytochrome b5-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

    Range
    6715658..6717750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066306285.1 → XP_066162382.1  uncharacterized protein LOC4351805

    UniProtKB/TrEMBL
    A0A8J8XUQ6, A3CFZ1, Q0IPC5, Q2QVN9

  2. XM_015762767.3 → XP_015618253.1  uncharacterized protein LOC4351805

    UniProtKB/TrEMBL
    A0A8J8XUQ6, A2ZJ31, A3CFZ1, Q0IPC5, Q2QVN9
    Conserved Domains (1) summary
    pfam00173
    Location:14 → 84
    Cyt-b5; Cytochrome b5-like Heme/Steroid binding domain
Nucleotide Protein
Heading Accession and Version

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