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fbxb-53 F-box associated domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 43578480, updated on 2-Nov-2024

Summary

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Official Symbol
fbxb-53
Official Full Name
F-box associated domain-containing protein
Primary source
WormBase:WBGene00018104
Locus tag
CELE_F36H5.5
See related
AllianceGenome:WB:WBGene00018104
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Acts upstream of or within ATF6-mediated unfolded protein response. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See fbxb-53 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003280.10 (1756882..1759452)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene F-box domain-containing protein Neighboring gene XK-related protein Neighboring gene Integral membrane protein Neighboring gene DUF1084 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large genetic diversity and strong positive selection in F-box and GPCR genes among the wild isolates of Caenorhabditis elegans. Ma F, et al. Genome Biol Evol, 2021 May 7. PMID 33693740, Free PMC Article
  2. Genetic interactions due to constitutive and inducible gene regulation mediated by the unfolded protein response in C. elegans. Shen X, et al. PLoS Genet, 2005 Sep. PMID 16184190, Free PMC Article
  3. The F-box protein family. Kipreos ET, et al. Genome Biol, 2000. PMID 11178263, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by WormBase

Process Evidence Code Pubs
acts_upstream_of_or_within ATF6-mediated unfolded protein response HEP PubMed 

General protein information

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Preferred Names
F-box associated domain-containing protein
NP_001379013.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    1756882..1759452
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001393009.1 → NP_001379013.1  F-box associated domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9MNN1
    Conserved Domains (1) summary
    pfam07735
    Location:203 → 266
    FBA_2; F-box associated
Nucleotide Protein
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