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B0280.17 K Homology domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 4363051, updated on 2-Nov-2024

Summary

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Official Symbol
B0280.17
Official Full Name
K Homology domain-containing protein
Primary source
WormBase:WBGene00044674
Locus tag
CELE_B0280.17
See related
AllianceGenome:WB:WBGene00044674
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See B0280.17 in Genome Data Viewer
Location:
chromosome: III
Exon count:
5
Sequence:
Chromosome: III; NC_003281.10 (7135024..7136115, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene WH1 domain-containing protein Neighboring gene Protection of telomeres homolog 1 Neighboring gene putative geranylgeranyl transferase type-2 subunit beta Neighboring gene ncRNA Neighboring gene Putative tyrosine-protein phosphatase B0280.11 Neighboring gene Glutamate receptor 2 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
K Homology domain-containing protein
NP_001040836.2
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7135024..7136115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001047371.5 → NP_001040836.2  K Homology domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040836.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q2V4X2
    Conserved Domains (1) summary
    cl00098
    Location:139 → 237
    KH-I; K homology (KH) RNA-binding domain, type I
Nucleotide Protein
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