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LINC03025 long intergenic non-protein coding RNA 3025 [ Homo sapiens (human) ]

Gene ID: 440896, updated on 28-Oct-2024

Summary

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Official Symbol
LINC03025provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3025provided by HGNC
Primary source
HGNC:HGNC:56158
See related
Ensembl:ENSG00000276462 AllianceGenome:HGNC:56158
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 16.1) See more
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Genomic context

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See LINC03025 in Genome Data Viewer
Location:
9p11.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (41100967..41124814, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (42170187..42194035)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (69174196..69198043, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene phosphoglucomutase 5 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19920 Neighboring gene uncharacterized LOC124902161 Neighboring gene uncharacterized LOC105376058 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:69179459-69180234 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:69180235-69181009 Neighboring gene forkhead box D4 like 6 Neighboring gene Zn regulated GTPase metalloprotein activator 1F Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:69261657-69262230 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:69262231-69262802

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ30529, FLJ45355, BX255923.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015361.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX255923
    Related
    ENST00000669967.1

  2. NR_147036.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK127288, BC032955, BX255923

  3. NR_147037.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX255923

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    41100967..41124814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    42170187..42194035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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