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SF3A3P2 splicing factor 3a, subunit 3 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 449645, updated on 17-Jun-2024

Summary

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Official Symbol
SF3A3P2provided by HGNC
Official Full Name
splicing factor 3a, subunit 3 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:23277
See related
AllianceGenome:HGNC:23277
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SF3A3P2 in Genome Data Viewer
Location:
11q24.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (123596738..123599474, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (123625708..123628444, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (123467446..123470182, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene GRAM domain containing 1B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5679 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5680 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5681 Neighboring gene microRNA 4493 Neighboring gene NANOG hESC enhancer GRCh37_chr11:123275922-123276438 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:123278189-123279097 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5683 Neighboring gene uncharacterized LOC124902776 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4015 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4016 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:123313949-123314928 Neighboring gene Sharpr-MPRA regulatory region 13459 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5684 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5685 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4017 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5686 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:123364173-123364689 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:123364690-123365206 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4018 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:123407917-123408491 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4019 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:123430192-123430855 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:123430856-123431518 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:123431519-123432182 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:123446487-123446988 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:123446989-123447488 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:123448087-123448624 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:123449825-123450047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:123450909-123451518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:123474209-123474708 Neighboring gene uncharacterized LOC124902777 Neighboring gene uncharacterized LOC105369543 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4020 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4021 Neighboring gene sodium voltage-gated channel beta subunit 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • SF3A3 pseudogene
  • splicing factor 3a, subunit 3, 60kDa pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_004710.5 

    Range
    101..2837
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    123596738..123599474 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    123625708..123628444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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