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PCGF1 polycomb group ring finger 1 [ Canis lupus familiaris (dog) ]

Gene ID: 475785, updated on 17-Aug-2024

Summary

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Official Symbol
PCGF1provided by VGNC
Official Full Name
polycomb group ring finger 1provided by VGNC
Primary source
VGNC:VGNC:44300
See related
Ensembl:ENSCAFG00845018818
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
14
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 17 NC_051821.1 (49491958..49501052)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 17 NC_006599.4 (48274395..48283486)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 17 NC_049238.1 (49133545..49142643)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 17 NC_049277.1 (48509085..48518179)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 17 NC_049758.1 (48575839..48584927)

Chromosome 17 - NC_051821.1Genomic Context describing neighboring genes Neighboring gene DEAQ-box RNA dependent ATPase 1 Neighboring gene T cell leukemia homeobox 2 Neighboring gene uncharacterized LOC119869720 Neighboring gene ladybird homeobox 2 Neighboring gene tetratricopeptide repeat domain 31 Neighboring gene coiled-coil domain containing 142 Neighboring gene mitochondrial ribosomal protein L53

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables promoter-specific chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PRC1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycomb group RING finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051821.1 Reference ROS_Cfam_1.0

    Range
    49491958..49501052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038691645.1 → XP_038547573.1  polycomb group RING finger protein 1 isoform X2

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  2. XM_038691647.1 → XP_038547575.1  polycomb group RING finger protein 1 isoform X4

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  3. XM_038691644.1 → XP_038547572.1  polycomb group RING finger protein 1 isoform X1

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  4. XM_038691646.1 → XP_038547574.1  polycomb group RING finger protein 1 isoform X3

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  5. XM_038691648.1 → XP_038547576.1  polycomb group RING finger protein 1 isoform X5

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 253
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  6. XM_038691649.1 → XP_038547577.1  polycomb group RING finger protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8C0KMV9, A0A8C0NXN6, A0A8I3P1I4
    Related
    ENSCAFP00845026013.1, ENSCAFT00845033227.1
    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 253
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

RNA

  1. XR_005440296.1 RNA Sequence

  2. XR_005440298.1 RNA Sequence

  3. XR_005440297.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049277.1 Alternate UMICH_Zoey_3.1

    Range
    48509085..48518179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038499087.1 → XP_038355015.1  polycomb group RING finger protein 1 isoform X2

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  2. XM_038499089.1 → XP_038355017.1  polycomb group RING finger protein 1 isoform X4

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  3. XM_038499086.1 → XP_038355014.1  polycomb group RING finger protein 1 isoform X1

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  4. XM_038499088.1 → XP_038355016.1  polycomb group RING finger protein 1 isoform X3

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  5. XM_038499091.1 → XP_038355019.1  polycomb group RING finger protein 1 isoform X5

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 253
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  6. XM_038499092.1 → XP_038355020.1  polycomb group RING finger protein 1 isoform X6

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 253
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

RNA

  1. XR_005338750.1 RNA Sequence

  2. XR_005338752.1 RNA Sequence

  3. XR_005338751.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049758.1 Alternate UNSW_CanFamBas_1.0

    Range
    48575839..48584927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038625716.1 → XP_038481644.1  polycomb group RING finger protein 1 isoform X2

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  2. XM_038625718.1 → XP_038481646.1  polycomb group RING finger protein 1 isoform X4

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  3. XM_038625715.1 → XP_038481643.1  polycomb group RING finger protein 1 isoform X7

  4. XM_038625717.1 → XP_038481645.1  polycomb group RING finger protein 1 isoform X3

  5. XM_038625719.1 → XP_038481647.1  polycomb group RING finger protein 1 isoform X5

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 253
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  6. XM_038625720.1 → XP_038481648.1  polycomb group RING finger protein 1 isoform X6

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 253
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

RNA

  1. XR_005406637.1 RNA Sequence

  2. XR_005406639.1 RNA Sequence

  3. XR_005406638.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049238.1 Alternate UU_Cfam_GSD_1.0

    Range
    49133545..49142643
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038561676.1 → XP_038417604.1  polycomb group RING finger protein 1 isoform X2

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  2. XM_038561678.1 → XP_038417606.1  polycomb group RING finger protein 1 isoform X4

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  3. XM_038561675.1 → XP_038417603.1  polycomb group RING finger protein 1 isoform X1

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  4. XM_038561677.1 → XP_038417605.1  polycomb group RING finger protein 1 isoform X3

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  5. XM_038561679.1 → XP_038417607.1  polycomb group RING finger protein 1 isoform X5

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 253
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  6. XM_038561680.1 → XP_038417608.1  polycomb group RING finger protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8C0KMV9, A0A8C0NXN6, A0A8I3P1I4
    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 253
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

RNA

  1. XR_005372540.1 RNA Sequence

  2. XR_005372542.1 RNA Sequence

  3. XR_005372541.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    48274395..48283486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038453143.1 → XP_038309071.1  polycomb group RING finger protein 1 isoform X2

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  2. XM_005630527.4 → XP_005630584.1  polycomb group RING finger protein 1 isoform X4

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  3. XM_005630524.4 → XP_005630581.1  polycomb group RING finger protein 1 isoform X1

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  4. XM_005630526.4 → XP_005630583.1  polycomb group RING finger protein 1 isoform X3

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 244
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  5. XM_005630529.4 → XP_005630586.1  polycomb group RING finger protein 1 isoform X5

    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 253
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

  6. XM_532995.7 → XP_532995.2  polycomb group RING finger protein 1 isoform X6

    See identical proteins and their annotated locations for XP_532995.2

    UniProtKB/TrEMBL
    A0A8C0KMV9, A0A8C0NXN6, A0A8I3P1I4
    Conserved Domains (2) summary
    cd16733
    Location:44 → 86
    RING-HC_PCGF1; RING finger, HC subclass, found in polycomb group RING finger protein 1 (PCGF1) and similar proteins
    cd17081
    Location:166 → 253
    RAWUL_PCGF1; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 1 (PCGF1) and similar proteins

RNA

  1. XR_002615387.2 RNA Sequence

  2. XR_002615389.2 RNA Sequence

  3. XR_002615388.2 RNA Sequence

Nucleotide Protein
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