U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [ Canis lupus familiaris (dog) ]

Gene ID: 479730, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
PLOD3provided by VGNC
Official Full Name
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3provided by VGNC
Primary source
VGNC:VGNC:44703
See related
Ensembl:ENSCAFG00845005125
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PLOD3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
19
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (8483656..8491120)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (10361502..10368957)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (8579093..8586540)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (8443884..8451311)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (8414481..8421939)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene claudin 15 Neighboring gene uncharacterized LOC119872142 Neighboring gene zinc finger HIT-type containing 1 Neighboring gene monoacylglycerol O-acyltransferase 3 Neighboring gene N-acetyltransferase 16 (putative)

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3; multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3
XP_038333876.1
XP_038395136.1
XP_038459215.1
XP_038523920.1
XP_536856.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    8483656..8491120
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038667992.1 → XP_038523920.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

    UniProtKB/TrEMBL
    A0A8I3MUP6, A0A8I3MZE0, A0A8P0PBE3, A0A8P0SIG0
    Related
    ENSCAFP00845007231.1, ENSCAFT00845009187.1
    Conserved Domains (1) summary
    smart00702
    Location:575 → 738
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    8443884..8451311
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038477948.1 → XP_038333876.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    8414481..8421939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038603287.1 → XP_038459215.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    8579093..8586540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038539208.1 → XP_038395136.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

    UniProtKB/TrEMBL
    A0A8C0KKK6, A0A8C0MBD9, A0A8C0S9T5

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    10361502..10368957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_536856.7 → XP_536856.2  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

    UniProtKB/TrEMBL
    A0A8I3MUP6, A0A8I3MZE0, A0A8P0PBE3, A0A8P0SIG0
    Conserved Domains (1) summary
    smart00702
    Location:575 → 738
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials