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CPSF2 cleavage and polyadenylation specific factor 2 [ Canis lupus familiaris (dog) ]

Gene ID: 480230, updated on 17-Aug-2024

Summary

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Official Symbol
CPSF2provided by VGNC
Official Full Name
cleavage and polyadenylation specific factor 2provided by VGNC
Primary source
VGNC:VGNC:39574
See related
Ensembl:ENSCAFG00845020659
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See CPSF2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
16
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (1413268..1447465)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (1383120..1417297)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (1428458..1462658)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (1351164..1385354)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (1307513..1341912)

Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111096945 Neighboring gene ataxin 3 Neighboring gene U4 spliceosomal RNA Neighboring gene NADH:ubiquinone oxidoreductase subunit B1 Neighboring gene uncharacterized LOC119872977 Neighboring gene solute carrier family 24 member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051812.1 Reference ROS_Cfam_1.0

    Range
    1413268..1447465
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038673049.1 → XP_038528977.1  cleavage and polyadenylation specificity factor subunit 2

    UniProtKB/TrEMBL
    A0A8C0L5G2, A0A8C0LC94, A0A8C0LT83, A0A8I3PD41
    Related
    ENSCAFP00845028506.1, ENSCAFT00845036421.1
    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049268.1 Alternate UMICH_Zoey_3.1

    Range
    1351164..1385354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038482696.1 → XP_038338624.1  cleavage and polyadenylation specificity factor subunit 2

    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

    Range
    1307513..1341912
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038608242.1 → XP_038464170.1  cleavage and polyadenylation specificity factor subunit 2

    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

    Range
    1428458..1462658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038544117.1 → XP_038400045.1  cleavage and polyadenylation specificity factor subunit 2

    UniProtKB/TrEMBL
    A0A8C0L5G2, A0A8C0LC94, A0A8C0LT83, A0A8I3PD41
    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    1383120..1417297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_537353.7 → XP_537353.2  cleavage and polyadenylation specificity factor subunit 2

    UniProtKB/TrEMBL
    A0A8C0L5G2, A0A8C0LC94, A0A8C0LT83, A0A8I3PD41
    Conserved Domains (4) summary
    smart01027
    Location:243 → 368
    Beta-Casp; Beta-Casp domain
    cd16293
    Location:7 → 204
    CPSF2-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 2 and related proteins; MBL-fold metallo-hydrolase domain
    pfam07521
    Location:529 → 591
    RMMBL; Zn-dependent metallo-hydrolase RNA specificity domain
    pfam13299
    Location:608 → 779
    CPSF100_C; Cleavage and polyadenylation factor 2 C-terminal
Nucleotide Protein
Heading Accession and Version

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