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USP9X ubiquitin specific peptidase 9 X-linked [ Canis lupus familiaris (dog) ]

Gene ID: 480885, updated on 5-Mar-2024

Summary

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Gene symbol
USP9X
Gene description
ubiquitin specific peptidase 9 X-linked
See related
Ensembl:ENSCAFG00845024336
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See USP9X in Genome Data Viewer
Location:
chromosome: X
Exon count:
41
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (35571563..35712343)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (22845661..23024786)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (35640469..35819595)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (35624905..35803984)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (35597545..35776521)

Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102154834 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene DEAD-box helicase 3 X-linked Neighboring gene voltage-dependent anion-selective channel protein 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X; probable ubiquitin carboxyl-terminal hydrolase FAF-X

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051843.1 Reference ROS_Cfam_1.0

    Range
    35571563..35712343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038449789.1 → XP_038305717.1  LOW QUALITY PROTEIN: probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1

    UniProtKB/TrEMBL
    A0A8P0SIK3
    Related
    ENSCAFT00845043003.1
    Conserved Domains (3) summary
    cd02659
    Location:1555 → 1958
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2097 → 2354
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:900 → 964
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049299.1 Alternate UMICH_Zoey_3.1

    Range
    35624905..35803984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038523235.1 → XP_038379163.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X2

    Conserved Domains (3) summary
    cd02659
    Location:1560 → 1963
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2102 → 2481
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:905 → 969
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_038523234.1 → XP_038379162.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X2

    Conserved Domains (3) summary
    cd02659
    Location:1560 → 1963
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2102 → 2481
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:905 → 969
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  3. XM_038523236.1 → XP_038379164.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X3

    Conserved Domains (3) summary
    cd02659
    Location:1555 → 1958
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2097 → 2476
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:900 → 964
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

    Range
    35597545..35776521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038651715.1 → XP_038507643.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X4

    Conserved Domains (3) summary
    cd02659
    Location:1560 → 1963
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2102 → 2481
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:905 → 969
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_038651714.1 → XP_038507642.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X4

    Conserved Domains (3) summary
    cd02659
    Location:1560 → 1963
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2102 → 2481
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:905 → 969
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  3. XM_038651716.1 → XP_038507644.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X5

    Conserved Domains (3) summary
    cd02659
    Location:1555 → 1958
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2097 → 2476
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:900 → 964
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

    Range
    35640469..35819595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038587199.1 → XP_038443127.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X6

    UniProtKB/TrEMBL
    A0A8C0R8Y3, A0A8C0S9B9
    Conserved Domains (3) summary
    cd02659
    Location:1560 → 1963
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2102 → 2481
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:905 → 969
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_038587198.1 → XP_038443126.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X6

    UniProtKB/TrEMBL
    A0A8C0R8Y3, A0A8C0S9B9
    Conserved Domains (3) summary
    cd02659
    Location:1560 → 1963
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2102 → 2481
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:905 → 969
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  3. XM_038587200.1 → XP_038443128.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X7

    UniProtKB/TrEMBL
    A0A8C0R8Y3
    Conserved Domains (3) summary
    cd02659
    Location:1555 → 1958
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2097 → 2476
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:900 → 964
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    22845661..23024786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038464693.1 → XP_038320621.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X8

    UniProtKB/TrEMBL
    A0A8C0R8Y3
    Conserved Domains (3) summary
    cd02659
    Location:1560 → 1963
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2102 → 2481
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:905 → 969
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_038464692.1 → XP_038320620.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X8

    UniProtKB/TrEMBL
    A0A8C0R8Y3
    Conserved Domains (3) summary
    cd02659
    Location:1560 → 1963
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2102 → 2481
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:905 → 969
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  3. XM_038464694.1 → XP_038320622.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X9

    UniProtKB/TrEMBL
    A0A8C0R8Y3, A0A8P0P8R6
    Conserved Domains (3) summary
    cd02659
    Location:1555 → 1958
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam12030
    Location:2097 → 2476
    DUF3517; Domain of unknown function (DUF3517)
    cl28922
    Location:900 → 964
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
Nucleotide Protein
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