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VMA21 vacuolar ATPase assembly factor VMA21 [ Canis lupus familiaris (dog) ]

Gene ID: 481074, updated on 17-Aug-2024

Summary

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Official Symbol
VMA21provided by VGNC
Official Full Name
vacuolar ATPase assembly factor VMA21provided by VGNC
Primary source
VGNC:VGNC:48270
See related
Ensembl:ENSCAFG00845024854 Ensembl:ENSCAFG00845024916
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (121647624..121723089)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (104810848..104816673)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (120734452..120740277)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (118368631..118374456)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (120851851..120857676)

Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L29-like Neighboring gene G protein-coupled receptor 50 Neighboring gene U6 spliceosomal RNA Neighboring gene PAS domain containing repressor 1 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar ATPase assembly integral membrane protein VMA21
Names
VMA21 vacuolar H+-ATPase homolog
VMA21, vacuolar ATPase assembly factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001252312.1 → NP_001239241.1  vacuolar ATPase assembly integral membrane protein VMA21

    Status: PROVISIONAL

    Source sequence(s)
    JAAUVH010000175
    UniProtKB/TrEMBL
    A0A8C0R6J3, A0A8C0SL72, A0A8I3PIV3
    Related
    ENSCAFP00845034365.1, ENSCAFT00845043854.1
    Conserved Domains (1) summary
    pfam09446
    Location:25 → 88
    VMA21; VMA21-like domain

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051843.1 Reference ROS_Cfam_1.0

    Range
    121647624..121723089
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038448845.1 → XP_038304773.1  vacuolar ATPase assembly integral membrane protein VMA21 isoform X4

    UniProtKB/TrEMBL
    A0A8C0NHK8, A0A8C0R6H1
    Conserved Domains (1) summary
    pfam09446
    Location:44 → 86
    VMA21; VMA21-like domain

  2. XM_038448841.1 → XP_038304769.1  vacuolar ATPase assembly integral membrane protein VMA21 isoform X3

  3. XM_038448843.1 → XP_038304771.1  vacuolar ATPase assembly integral membrane protein VMA21 isoform X2

  4. XM_038448844.1 → XP_038304772.1  vacuolar ATPase assembly integral membrane protein VMA21 isoform X2

  5. XM_038448842.1 → XP_038304770.1  vacuolar ATPase assembly integral membrane protein VMA21 isoform X1

    Related
    ENSCAFT00845043967.1

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049299.1 Alternate UMICH_Zoey_3.1

    Range
    118368631..118374456
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

    Range
    120851851..120857676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

    Range
    120734452..120740277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    104810848..104816673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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