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TRMU tRNA mitochondrial 2-thiouridylase [ Canis lupus familiaris (dog) ]

Gene ID: 481204, updated on 17-Aug-2024

Summary

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Official Symbol
TRMUprovided by VGNC
Official Full Name
tRNA mitochondrial 2-thiouridylaseprovided by VGNC
Primary source
VGNC:VGNC:47861
See related
Ensembl:ENSCAFG00845009937
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TRMU in Genome Data Viewer
Location:
chromosome: 10
Exon count:
12
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (20575454..20593140, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (19764367..19782082, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (20790582..20808285, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (20296080..20313753, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (20608580..20626275, complement)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111097616 Neighboring gene cadherin EGF LAG seven-pass G-type receptor 1 Neighboring gene uncharacterized LOC119880895 Neighboring gene G2 and S-phase expressed 1 Neighboring gene tetratricopeptide repeat domain 38

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfurtransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA wobble position uridine thiolation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial tRNA-specific 2-thiouridylase 1
Names
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
XP_013972754.1
XP_022279993.1
XP_038344229.1
XP_038344230.1
XP_038344231.1
XP_038406134.1
XP_038406135.1
XP_038406136.1
XP_038470122.1
XP_038470123.1
XP_038470124.1
XP_038535467.1
XP_038535468.1
XP_038535469.1
XP_538325.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    20575454..20593140 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038679539.1 → XP_038535467.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KA63, A0A8C0MJX4, A0A8C0QQ09, A0A8I3N2T0
    Related
    ENSCAFP00845013603.1, ENSCAFT00845017478.1
    Conserved Domains (1) summary
    pfam03054
    Location:5 → 383
    tRNA_Me_trans; tRNA methyl transferase

  2. XM_038679540.1 → XP_038535468.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X2

    Conserved Domains (1) summary
    pfam03054
    Location:48 → 251
    tRNA_Me_trans; tRNA methyl transferase

  3. XM_038679541.1 → XP_038535469.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X2

    Conserved Domains (1) summary
    pfam03054
    Location:48 → 251
    tRNA_Me_trans; tRNA methyl transferase

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    20296080..20313753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038488301.1 → XP_038344229.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X1

    Conserved Domains (1) summary
    pfam03054
    Location:5 → 383
    tRNA_Me_trans; tRNA methyl transferase

  2. XM_038488302.1 → XP_038344230.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X2

    Conserved Domains (1) summary
    pfam03054
    Location:48 → 251
    tRNA_Me_trans; tRNA methyl transferase

  3. XM_038488303.1 → XP_038344231.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X2

    Conserved Domains (1) summary
    pfam03054
    Location:48 → 251
    tRNA_Me_trans; tRNA methyl transferase

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    20608580..20626275 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038614194.1 → XP_038470122.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X1

    Conserved Domains (1) summary
    pfam03054
    Location:5 → 383
    tRNA_Me_trans; tRNA methyl transferase

  2. XM_038614195.1 → XP_038470123.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X2

    Conserved Domains (1) summary
    pfam03054
    Location:48 → 251
    tRNA_Me_trans; tRNA methyl transferase

  3. XM_038614196.1 → XP_038470124.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X2

    Conserved Domains (1) summary
    pfam03054
    Location:48 → 251
    tRNA_Me_trans; tRNA methyl transferase

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    20790582..20808285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038550206.1 → XP_038406134.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KA63, A0A8C0MJX4, A0A8C0QQ09, A0A8I3N2T0
    Conserved Domains (1) summary
    pfam03054
    Location:5 → 383
    tRNA_Me_trans; tRNA methyl transferase

  2. XM_038550207.1 → XP_038406135.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X2

    Conserved Domains (1) summary
    pfam03054
    Location:48 → 251
    tRNA_Me_trans; tRNA methyl transferase

  3. XM_038550208.1 → XP_038406136.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X2

    Conserved Domains (1) summary
    pfam03054
    Location:48 → 251
    tRNA_Me_trans; tRNA methyl transferase

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    19764367..19782082 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_538325.5 → XP_538325.2  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0KA63, A0A8C0MJX4, A0A8C0QQ09, A0A8I3N2T0
    Conserved Domains (1) summary
    pfam03054
    Location:5 → 383
    tRNA_Me_trans; tRNA methyl transferase

  2. XM_014117279.3 → XP_013972754.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X2

    Conserved Domains (1) summary
    pfam03054
    Location:48 → 251
    tRNA_Me_trans; tRNA methyl transferase

  3. XM_022424285.2 → XP_022279993.1  mitochondrial tRNA-specific 2-thiouridylase 1 isoform X2

    Conserved Domains (1) summary
    pfam03054
    Location:48 → 251
    tRNA_Me_trans; tRNA methyl transferase
Nucleotide Protein
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