SPANXN2 SPANX family member N2 [Homo sapiens (human)] - Gene

Summary

Official Symbol: SPANXN2provided by HGNC
Official Full Name: SPANX family member N2provided by HGNC
Primary source: HGNC:HGNC:33175
See related: Ensembl:ENSG00000268988 MIM:300665; AllianceGenome:HGNC:33175
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: CT11.7; SPANX-N2
Expression: Restricted expression toward testis (RPKM 3.1) See more
Orthologs: all
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Genomic context

Location:: Xq27.3

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	X	NC_000023.11 (143711955..143720752, complement)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	X	NC_060947.1 (142016971..142025768, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	X	NC_000023.10 (142795055..142803846, complement)

Chromosome X - NC_000023.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by GOA

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

General protein information

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Preferred Names: sperm protein associated with the nucleus on the X chromosome N2

Names: cancer/testis antigen family 11, member 7; nuclear-associated protein SPAN-Xn2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001009615.3 → NP_001009615.1 sperm protein associated with the nucleus on the X chromosome N2

See identical proteins and their annotated locations for NP_001009615.1

Status: VALIDATED

Source sequence(s)

AC239921, AL500522

Consensus CDS

CCDS35419.1

UniProtKB/Swiss-Prot

Q0ZNM2, Q5MJ10

Related

ENSP00000470584.1, ENST00000598475.2

Conserved Domains (2) summary

pfam06957
Location:81 → 166

COPI_C; Coatomer (COPI) alpha subunit C-terminus

pfam07458
Location:1 → 95

SPAN-X; Sperm protein associated with nucleus, mapped to X chromosome