Ly49si2 immunoreceptor Ly49si2 [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: Ly49si2provided by RGD
Full Name: immunoreceptor Ly49si2provided by RGD
Primary source: RGD:1359240
See related: AllianceGenome:RGD:1359240
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable signaling receptor activity. Predicted to be involved in regulation of signal transduction. Predicted to be located in plasma membrane. Predicted to be active in cell surface. [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Spleen (RPKM 107.5), Lung (RPKM 27.9) and 8 other tissues See more
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Genomic context

Location:: 4q42

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	4	NC_086022.1 (165358092..165410591, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	4	NC_051339.1 (163672025..163845961, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	4	NC_005103.4 (163920579..163968089, complement)

Chromosome 4 - NC_086022.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables signaling receptor activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulation of signal transduction	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cell surface	IBA Inferred from Biological aspect of Ancestor more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: immunoreceptor Ly49si2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001009498.2 → NP_001009498.1 immunoreceptor Ly49si2

See identical proteins and their annotated locations for NP_001009498.1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000004

UniProtKB/TrEMBL

A0A8I6ADB3, E9PSL3, Q5MPP6

Conserved Domains (2) summary

cd03593
Location:145 → 260

CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

pfam08391
Location:40 → 158

Ly49; Ly49-like protein, N-terminal region

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086022.1 Reference GRCr8

Range

165358092..165410591 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063286444.1 → XP_063142514.1 immunoreceptor Ly49si2 isoform X1

UniProtKB/TrEMBL

E9PSL3, Q5MPP6
XM_017592758.3 → XP_017448247.1 immunoreceptor Ly49si2 isoform X1

UniProtKB/TrEMBL

A0A8I6ADB3, E9PSL3, Q5MPP6

Conserved Domains (2) summary

cd03593
Location:145 → 260

CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

pfam08391
Location:40 → 158

Ly49; Ly49-like protein, N-terminal region
XM_017592759.3 → XP_017448248.1 immunoreceptor Ly49si2 isoform X1

UniProtKB/TrEMBL

A0A8I6ADB3, E9PSL3, Q5MPP6

Conserved Domains (2) summary

cd03593
Location:145 → 260

CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

pfam08391
Location:40 → 158

Ly49; Ly49-like protein, N-terminal region
XM_008763406.4 → XP_008761628.1 immunoreceptor Ly49si2 isoform X1

Conserved Domains (2) summary

cd03593
Location:145 → 260

CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

pfam08391
Location:40 → 158

Ly49; Ly49-like protein, N-terminal region
XM_063286445.1 → XP_063142515.1 immunoreceptor Ly49si2 isoform X2