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CLEC18B C-type lectin domain family 18 member B [ Homo sapiens (human) ]

Gene ID: 497190, updated on 2-Nov-2024

Summary

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Official Symbol
CLEC18Bprovided by HGNC
Official Full Name
C-type lectin domain family 18 member Bprovided by HGNC
Primary source
HGNC:HGNC:33849
See related
Ensembl:ENSG00000140839 MIM:616572; AllianceGenome:HGNC:33849
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MRCL2
Summary
Predicted to enable polysaccharide binding activity. Predicted to be located in Golgi apparatus; endosome; and sarcoplasmic reticulum. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in kidney (RPKM 34.8) and testis (RPKM 8.2) See more
Orthologs
all
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Genomic context

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See CLEC18B in Genome Data Viewer
Location:
16q23.1
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (74408631..74424249, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (80223868..80242200, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (74442529..74456039, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr16:74414879-74415096 Neighboring gene nuclear pore complex interacting protein family member B15 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:74431311-74432152 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:74433981-74434480 Neighboring gene uncharacterized LOC105376772 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:74441122-74442022 Neighboring gene uncharacterized LOC107984827 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:74465107-74465660 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:74496013-74497212 Neighboring gene RNA, U6 small nuclear 237, pseudogene Neighboring gene golgi glycoprotein 1 Neighboring gene NANOG hESC enhancer GRCh37_chr16:74519761-74520313 Neighboring gene NANOG hESC enhancer GRCh37_chr16:74529259-74529934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:74539585-74540084 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:74586439-74586940 Neighboring gene ribosomal protein S10 pseudogene 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Overexpression of CLEC18B Associates With the Proliferation, Migration, and Prognosis of Glioblastoma. Guo RM, et al. ASN Neuro, 2018 Jan-Dec. PMID 29914265, Free PMC Article
  2. Human CLEC18 Gene Cluster Contains C-type Lectins with Differential Glycan-binding Specificity. Huang YL, et al. J Biol Chem, 2015 Aug 28. PMID 26170455, Free PMC Article
  3. The C-type lectin-like domain superfamily. Zelensky AN, et al. FEBS J, 2005 Dec. PMID 16336259
  4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. Clark HF, et al. Genome Res, 2003 Oct. PMID 12975309, Free PMC Article
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables polysaccharide binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus TAS
Traceable Author Statement
more info
 PubMed 
located_in endosome TAS
Traceable Author Statement
more info
 PubMed 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in sarcoplasmic reticulum TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 18 member B
Names
mannose receptor-like 2
mannose receptor-like protein 1
secretory protein LOC497190

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011880.3 → NP_001011880.2  C-type lectin domain family 18 member B isoform 2 precursor

    See identical proteins and their annotated locations for NP_001011880.2

    Status: VALIDATED

    Source sequence(s)
    AY358373, BM695392, DA374548, DA375446, DC309733
    Consensus CDS
    CCDS32484.1
    UniProtKB/Swiss-Prot
    B4DF90, Q6UXF7
    UniProtKB/TrEMBL
    F5H550
    Related
    ENSP00000341051.5, ENST00000339953.9
    Conserved Domains (2) summary
    cd00037
    Location:310 → 443
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cd05380
    Location:50 → 183
    SCP_euk; SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed ...

  2. NM_001385192.1 → NP_001372121.1  C-type lectin domain family 18 member B isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC009053
    Consensus CDS
    CCDS92195.1
    UniProtKB/TrEMBL
    A0A804HJ60, F5H550
    Conserved Domains (2) summary
    cd00037
    Location:310 → 434
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cd05380
    Location:50 → 183
    CAP_euk; Eukaryotic CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins

  3. NM_001385193.1 → NP_001372122.1  C-type lectin domain family 18 member B isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AC009053
    Consensus CDS
    CCDS92195.1
    UniProtKB/TrEMBL
    A0A804HJ60, F5H550
    Related
    ENSP00000507367.1, ENST00000682950.1
    Conserved Domains (2) summary
    cd00037
    Location:310 → 434
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cd05380
    Location:50 → 183
    CAP_euk; Eukaryotic CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins

  4. NM_001385194.1 → NP_001372123.1  C-type lectin domain family 18 member B isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    AC009053
    UniProtKB/TrEMBL
    F8W692
    Conserved Domains (2) summary
    cd00037
    Location:230 → 354
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl00133
    Location:73 → 109
    CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family

  5. NM_001385195.1 → NP_001372124.1  C-type lectin domain family 18 member B isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    AC009053
    UniProtKB/TrEMBL
    F8W692
    Conserved Domains (2) summary
    cd00037
    Location:230 → 354
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl00133
    Location:73 → 109
    CAP; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    74408631..74424249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047434174.1 → XP_047290130.1  C-type lectin domain family 18 member B isoform X1

    UniProtKB/TrEMBL
    A0A804HJ60

  2. XM_047434173.1 → XP_047290129.1  C-type lectin domain family 18 member B isoform X1

    UniProtKB/TrEMBL
    A0A804HJ60

  3. XM_047434172.1 → XP_047290128.1  C-type lectin domain family 18 member B isoform X1

    UniProtKB/TrEMBL
    A0A804HJ60

  4. XM_047434176.1 → XP_047290132.1  C-type lectin domain family 18 member B isoform X1

    UniProtKB/TrEMBL
    A0A804HJ60

  5. XM_047434175.1 → XP_047290131.1  C-type lectin domain family 18 member B isoform X1

    UniProtKB/TrEMBL
    A0A804HJ60

  6. XM_047434177.1 → XP_047290133.1  C-type lectin domain family 18 member B isoform X2

  7. XM_047434178.1 → XP_047290134.1  C-type lectin domain family 18 member B isoform X3

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    80223868..80242200 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047446631.1 → XP_047302587.1  C-type lectin domain family 18 member B isoform X4

  2. XM_047446638.1 → XP_047302594.1  C-type lectin domain family 18 member B isoform X10

  3. XM_047446632.1 → XP_047302588.1  C-type lectin domain family 18 member B isoform X5

  4. XM_047446633.1 → XP_047302589.1  C-type lectin domain family 18 member B isoform X6

  5. XM_047446630.1 → XP_047302586.1  C-type lectin domain family 18 member B isoform X4

  6. XM_047446629.1 → XP_047302585.1  C-type lectin domain family 18 member B isoform X4

  7. XM_047446639.1 → XP_047302595.1  C-type lectin domain family 18 member B isoform X11

  8. XM_047446637.1 → XP_047302593.1  C-type lectin domain family 18 member B isoform X1

  9. XM_047446636.1 → XP_047302592.1  C-type lectin domain family 18 member B isoform X9

  10. XM_047446635.1 → XP_047302591.1  C-type lectin domain family 18 member B isoform X8

  11. XM_047446634.1 → XP_047302590.1  C-type lectin domain family 18 member B isoform X7

RNA

  1. XR_007086622.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6UXF7.2 GenPept UniProtKB/Swiss-Prot:Q6UXF7

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