Litafd LITAF domain containing [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: Litafdprovided by RGD
Full Name: LITAF domain containingprovided by RGD
Primary source: RGD:1564086
See related: AllianceGenome:RGD:1564086
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1564086
Summary: Predicted to enable metal ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane. Orthologous to human LITAFD (LITAF domain containing). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Restricted expression toward (RPKM 44.7) See more
Orthologs: human mouse all
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Genomic context

Location:: 10q12

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	10	NC_086028.1 (7438372..7442349, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	10	NC_051345.1 (6931719..6935869, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	10	NC_005109.4 (7026271..7029705, complement)

Chromosome 10 - NC_086028.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in endosome membrane	IEA Inferred from Electronic Annotation more info
located_in lysosomal membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: lITAF domain-containing protein

Names: lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001395427.1 → NP_001382356.1 lITAF domain-containing protein isoform 1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000010

Conserved Domains (1) summary

cl02754
Location:2 → 71

zf-LITAF-like; LITAF-like zinc ribbon domain
NM_001395428.1 → NP_001382357.1 lITAF domain-containing protein isoform 2

Status: VALIDATED

Source sequence(s)

JAXUCZ010000010

Conserved Domains (1) summary

cl02754
Location:2 → 42

zf-LITAF-like; LITAF-like zinc ribbon domain