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Rbm25l1 RNA binding motif protein 25-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 497865, updated on 17-Aug-2024

Summary

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Symbol
Rbm25l1provided by RGD
Full Name
RNA binding motif protein 25-like 1provided by RGD
Primary source
RGD:1565486
See related
AllianceGenome:RGD:1565486
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565486
Summary
Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Orthologous to human RBM25 (RNA binding motif protein 25). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
10q12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (10773494..10776509)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (10267026..10270510)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (10457316..10460540)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene RNA binding fox-1 homolog 1 Neighboring gene ribosomal protein L11, pseudogene 1 Neighboring gene uncharacterized LOC134480751 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene uncharacterized LOC108352213

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of oxygen/glucose-deprivation-induced changes in SUMO3 conjugation using SILAC-based quantitative proteomics. Yang W, et al. J Proteome Res, 2012 Feb 3. PMID 22082260, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of alternative mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RNA-binding protein 25

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    10773494..10776509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003750770.5 → XP_003750818.2  RNA-binding protein 25

    UniProtKB/TrEMBL
    A0A8I5ZWC8, F1LT30
    Conserved Domains (2) summary
    smart00311
    Location:736 → 809
    PWI; domain in splicing factors
    cd12446
    Location:87 → 169
    RRM_RBM25; RNA recognition motif (RRM) found in eukaryotic RNA-binding protein 25 and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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