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Stfa2l2 stefin A2-like 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 498087, updated on 17-Aug-2024

Summary

Symbol
Stfa2l2provided by RGD
Full Name
stefin A2-like 2provided by RGD
Primary source
RGD:1560676
See related
EnsemblRapid:ENSRNOG00000076506 AllianceGenome:RGD:1560676
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Stfa2l3; RGD1560676
Expression
Biased expression in Spleen (RPKM 8.5), Lung (RPKM 8.5) and 3 other tissues See more
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Genomic context

See Stfa2l2 in Genome Data Viewer
Location:
11q22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (78003490..78005912)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (64498151..64500576)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (67451583..67454007)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene cystatin domain containing 4 Neighboring gene U6 spliceosomal RNA Neighboring gene stefin-2-like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
stefin A2-like 2; stefin-2
Names
stefin A2-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001430800.1NP_001417729.1  stefin A2-like 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000011
    UniProtKB/TrEMBL
    A0A8I6GJV2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    78003490..78005912
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006248415.5XP_006248477.2  stefin-2

    Related
    ENSRNOP00000091715.1, ENSRNOT00000098787.2
    Conserved Domains (1) summary
    pfam00031
    Location:1097
    Cystatin; Cystatin domain