Dipk1c divergent protein kinase domain 1C [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Dipk1cprovided by RGD
Official Full Name: divergent protein kinase domain 1Cprovided by RGD
Primary source: RGD:1559694
See related: EnsemblRapid:ENSRNOG00000015448 AllianceGenome:RGD:1559694
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Fam69c; RGD1559694
Summary: Predicted to be located in endoplasmic reticulum membrane. Orthologous to human DIPK1C (divergent protein kinase domain 1C). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Brain (RPKM 24.2), Muscle (RPKM 4.7) and 3 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 18q12.3

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	18	NC_086036.1 (80362854..80384774)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	18	NC_051353.1 (78087972..78109910)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	18	NC_005117.4 (81569693..81591683)

Chromosome 18 - NC_086036.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: divergent protein kinase domain 1C

Names: family with sequence similarity 69, member C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001432480.1 → NP_001419409.1 divergent protein kinase domain 1C

Status: VALIDATED

Source sequence(s)

JAXUCZ010000018

UniProtKB/TrEMBL

D3ZJ65

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086036.1 Reference GRCr8

Range

80362854..80384774

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_574179.9 → XP_574179.1 divergent protein kinase domain 1C

Related

ENSRNOP00000020858.5, ENSRNOT00000020858.7

Conserved Domains (2) summary

pfam12260
Location:183 → 373

PIP49_C; Protein-kinase domain of FAM69

pfam14875
Location:13 → 167

PIP49_N; N-term cysteine-rich ER, FAM69