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Trappc2ll1 trafficking protein particle complex subunit 2L like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 498914, updated on 2-Nov-2024

Summary

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Official Symbol
Trappc2ll1provided by RGD
Official Full Name
trafficking protein particle complex subunit 2L like 1provided by RGD
Primary source
RGD:1564492
See related
AllianceGenome:RGD:1564492
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564492
Summary
Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Predicted to be part of TRAPP complex. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 107.3), Heart (RPKM 93.4) and 9 other tissues See more
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Genomic context

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See Trappc2ll1 in Genome Data Viewer
Location:
19p11
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (13689662..13690217, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (13683939..13684509, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (6979525..6980080, complement)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene RASD family, member 2 Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 3, pseudogene 1 Neighboring gene IQ domain-containing protein M-like Neighboring gene small nucleolar RNA U3 Neighboring gene septin-7-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
part_of TRAPP complex IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
similar to hypothetical protein, 2-6; trafficking protein particle complex subunit 2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    13689662..13690217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017592362.3 → XP_017447851.1  trafficking protein particle complex subunit 2-like protein

    UniProtKB/TrEMBL
    A0A8I5ZRE4
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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