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Actmap actin maturation protease [ Rattus norvegicus (Norway rat) ]

Gene ID: 499106, updated on 2-Nov-2024

Summary

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Official Symbol
Actmapprovided by RGD
Official Full Name
actin maturation proteaseprovided by RGD
Primary source
RGD:1560854
See related
EnsemblRapid:ENSRNOG00000037715 AllianceGenome:RGD:1560854
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1560854
Summary
Predicted to enable cysteine-type aminopeptidase activity and initiator methionyl aminopeptidase activity. Predicted to be involved in protein processing. Orthologous to human ACTMAP (actin maturation protease). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 25.0), Kidney (RPKM 16.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Actmap in Genome Data Viewer
Location:
1q21
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (91618012..91627490)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (82490313..82499841)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (84008263..84017741)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene RAB4B, member RAS oncogene family Neighboring gene MIA SH3 domain containing Neighboring gene small nuclear ribonucleoprotein polypeptide A Neighboring gene inositol-trisphosphate 3-kinase C Neighboring gene coenzyme Q8B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables cysteine-type aminopeptidase activity ISO
Inferred from Sequence Orthology
more info
  
enables initiator methionyl aminopeptidase activity ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in protein processing ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
actin maturation protease
Names
UPF0692 protein C19orf54 homolog
NP_001333237.1
XP_038943077.1
XP_038943078.1
XP_038943081.1
XP_038943084.1
XP_038943097.1
XP_038943107.1
XP_038943108.1
XP_038943112.1
XP_038943117.1
XP_038943119.1
XP_038943121.1
XP_038943127.1
XP_063126935.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001346308.1 → NP_001333237.1  actin maturation protease

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A0A0G2JWN4
    Related
    ENSRNOP00000069948.2, ENSRNOT00000081121.3

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    91618012..91627490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039087193.2 → XP_038943121.1  actin maturation protease isoform X5

  2. XM_039087149.2 → XP_038943077.1  actin maturation protease isoform X1

    UniProtKB/TrEMBL
    A0A0G2JWN4

  3. XM_039087153.2 → XP_038943081.1  actin maturation protease isoform X3

  4. XM_039087150.2 → XP_038943078.1  actin maturation protease isoform X2

  5. XM_039087156.1 → XP_038943084.1  actin maturation protease isoform X4

  6. XM_039087191.2 → XP_038943119.1  actin maturation protease isoform X4

  7. XM_039087184.2 → XP_038943112.1  actin maturation protease isoform X4

  8. XM_063270865.1 → XP_063126935.1  actin maturation protease isoform X5

  9. XM_039087169.2 → XP_038943097.1  actin maturation protease isoform X4

  10. XM_039087179.2 → XP_038943107.1  actin maturation protease isoform X4

  11. XM_039087189.2 → XP_038943117.1  actin maturation protease isoform X4

  12. XM_039087199.2 → XP_038943127.1  actin maturation protease isoform X5

  13. XM_039087180.2 → XP_038943108.1  actin maturation protease isoform X4

Nucleotide Protein Strain
Heading Accession and Version

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