U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ccdc179 coiled-coil domain containing 179 [ Rattus norvegicus (Norway rat) ]

Gene ID: 499158, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Ccdc179provided by RGD
Official Full Name
coiled-coil domain containing 179provided by RGD
Primary source
RGD:1559980
See related
EnsemblRapid:ENSRNOG00000049297 AllianceGenome:RGD:1559980
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1559980
Summary
Orthologous to human CCDC179 (coiled-coil domain containing 179). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 884.2) See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Ccdc179 in Genome Data Viewer
Location:
1q22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (110736292..110740256, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (101600369..101604288, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (107381355..107385257, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene growth arrest-specific 2 Neighboring gene small VCP interacting protein Neighboring gene stress-induced phosphoprotein 1, pseudogene 1 Neighboring gene heat shock cognate 71 kDa protein-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
coiled-coil domain-containing protein 179

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195599.2 → NP_001182528.1  coiled-coil domain-containing protein 179

    See identical proteins and their annotated locations for NP_001182528.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/TrEMBL
    A6JBH9, M0R922
    Related
    ENSRNOP00000065982.1, ENSRNOT00000074296.3

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    110736292..110740256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063271129.1 → XP_063127199.1  coiled-coil domain-containing protein 179 isoform X3

  2. XM_063271120.1 → XP_063127190.1  coiled-coil domain-containing protein 179 isoform X2

  3. XM_063271117.1 → XP_063127187.1  coiled-coil domain-containing protein 179 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.